Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2232
(693 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 35 0.063
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 30 1.8
Z81593-7|CAB63316.2| 400|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z72503-3|CAE17724.1| 217|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z81097-15|CAB03172.1| 412|Caenorhabditis elegans Hypothetical p... 28 7.3
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 28 7.3
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 28 7.3
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 28 7.3
Z69383-12|CAM06589.1| 165|Caenorhabditis elegans Hypothetical p... 27 9.6
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 34.7 bits (76), Expect = 0.063
Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Frame = +2
Query: 314 NKIIIGGDSNAK-STWWGSLKVDSRGEELAGALE-EMDMQILNVGDTPTFDTIRGNKTYS 487
+K II GD NA S W D+RG ELA ++ D+ I N D TYS
Sbjct: 32 SKSIISGDVNAHHSAWHSEGSEDTRGRELAELIDLHPDLIIQNEQVHTRAD------TYS 85
Query: 488 -SFVDITVCSADALSLVEDWRVDDSMTSSDHNTVMFKV 598
S DIT+C+AD L+ W + SDH + K+
Sbjct: 86 ISSPDITICTAD-LATKCHWSTLYKL-GSDHIPMKLKI 121
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -1
Query: 555 SSTLQSSTRDSASAEQTVMSTKLEYVLFPRIVSNVGVSPTFSIC 424
S+T QSS+ ++S T +ST + P I S + P +IC
Sbjct: 339 STTQQSSSTITSSPSSTTLSTSIPTTTTPEITSTLSSLPDNAIC 382
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -1
Query: 555 SSTLQSSTRDSASAEQTVMSTKLEYVLFPRIVSNVGVSPTFSIC 424
S+T QSS+ ++S T +ST + P I S + P +IC
Sbjct: 339 STTQQSSSTITSSPSSTTLSTSIPTTTTPEITSTLSSLPDNAIC 382
>Z81593-7|CAB63316.2| 400|Caenorhabditis elegans Hypothetical
protein T20B3.13 protein.
Length = 400
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 302 KAGNNKIIIGG-DSNAKSTWW--GSLKVDSRGEELAGALEEMDMQILNVGDTPTFDTIRG 472
K + II+GG S KS WW GS V+ + + +L+VGD +DT+
Sbjct: 324 KFSDTSIILGGIASTPKSIWWFDGS-PVNFLNFKTSQRTVASSCIVLHVGDGGDWDTVDC 382
Query: 473 NKTYSSFV 496
+ T S+F+
Sbjct: 383 STTVSTFL 390
>Z72503-3|CAE17724.1| 217|Caenorhabditis elegans Hypothetical
protein C26C6.9 protein.
Length = 217
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = +2
Query: 428 ILNVGDTPTFDTIRGNKTYSSFVDITVCSADALSLVEDWRVDDSMTSSDHNT 583
ILN+G PTFDT+ Y +T S D DW D +HNT
Sbjct: 54 ILNIGMRPTFDTV-----YPMQFRVTSPSGD----FSDWASGDGDAHMEHNT 96
>Z81097-15|CAB03172.1| 412|Caenorhabditis elegans Hypothetical
protein K07A1.11 protein.
Length = 412
Score = 27.9 bits (59), Expect = 7.3
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +2
Query: 503 TVCSADALSLVEDWRVDDSMTSSD 574
T+CS+D + ++ W V +S+ SS+
Sbjct: 382 TICSSDEFNALQVWEVSNSLVSSE 405
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 288 FSCSRYGSIAWSGSK*NEATTISQALVLNLTT 193
F C+ G IAW+ K NE T+ +A V + T
Sbjct: 678 FRCNEMGHIAWNCPKKNENTSEKEAPVAKVET 709
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 288 FSCSRYGSIAWSGSK*NEATTISQALVLNLTT 193
F C+ G IAW+ K NE T+ +A V + T
Sbjct: 581 FRCNEMGHIAWNCPKKNENTSEKEAPVAKVET 612
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 288 FSCSRYGSIAWSGSK*NEATTISQALVLNLTT 193
F C+ G IAW+ K NE T+ +A V + T
Sbjct: 592 FRCNEMGHIAWNCPKKNENTSEKEAPVAKVET 623
>Z69383-12|CAM06589.1| 165|Caenorhabditis elegans Hypothetical
protein F13E9.16 protein.
Length = 165
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = -3
Query: 325 YNFVVPCFQLD-LF*LLQIRLDCLVRLKVERS 233
YNFVVPCF + ++ +LQ+++ VRL + S
Sbjct: 70 YNFVVPCFMVQPIYPVLQVQVS--VRLNSKNS 99
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,387,667
Number of Sequences: 27780
Number of extensions: 315915
Number of successful extensions: 876
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -