Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2232
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.52 
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    22   6.4  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 15/64 (23%), Positives = 34/64 (53%)
 Frame = +2

Query: 404  ALEEMDMQILNVGDTPTFDTIRGNKTYSSFVDITVCSADALSLVEDWRVDDSMTSSDHNT 583
            A+ E   ++L+ G+  +   +  +   SS VD++      +    D+ VD+S +SS +++
Sbjct: 903  AMSESSKKVLSPGELLS-SCVSNDGGCSSLVDVSTPVNKKVYKQNDYIVDESSSSSFYSS 961

Query: 584  VMFK 595
             ++K
Sbjct: 962  FLYK 965


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 73  RGENFPVHELR*RS 114
           RG NFPV+++  RS
Sbjct: 291 RGNNFPVYQVEKRS 304


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,760
Number of Sequences: 438
Number of extensions: 4452
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)