Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2231
         (364 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce...    50   1e-07
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac...    50   1e-07
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   1.2  
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   3.6  
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom...    25   3.6  
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   3.6  
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    25   4.8  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    25   4.8  

>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 149

 Score = 50.0 bits (114), Expect = 1e-07
 Identities = 27/51 (52%), Positives = 31/51 (60%)
 Frame = -3

Query: 356 KKGQEEDQAKKGIRRTQKFQGAIVGASLSDIMAKGNMKPEVGKAQREQAIK 204
           KKG  E+ AKK  RRT K Q  IVGA+L  I  K N +PEV  A R  A+K
Sbjct: 60  KKGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEVRAAARAAALK 110


>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
           L24|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 149

 Score = 50.0 bits (114), Expect = 1e-07
 Identities = 27/51 (52%), Positives = 31/51 (60%)
 Frame = -3

Query: 356 KKGQEEDQAKKGIRRTQKFQGAIVGASLSDIMAKGNMKPEVGKAQREQAIK 204
           KKG  E+ AKK  RRT K Q  IVGA+L  I  K N +PEV  A R  A+K
Sbjct: 60  KKGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEVRAAARAAALK 110


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 16/26 (61%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 208 MACSLC-ALPTSGFILPLAIMSLSEA 282
           M CSL  ALPTSGF    AIM  +EA
Sbjct: 804 MMCSLAMALPTSGFPNMTAIMMENEA 829


>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 247 ILPLAIMSLSEAPTIAPWNFWVLLIPFFAWSSSWPFLNL 363
           I P+    +S++     W FW+LLI    ++  W FL L
Sbjct: 182 IAPIISGFISQSSIGWQWEFWILLI-LSGFNLFWAFLLL 219


>SPBPB2B2.16c |||MFS family membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 247 ILPLAIMSLSEAPTIAPWNFWVLLIPFFAWSSSWPFLNL 363
           I P+    +S++     W FW+LLI    ++  W FL L
Sbjct: 182 IAPIISGFISQSSIGWQWEFWILLI-LSGFNLFWAFLLL 219


>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 247 ILPLAIMSLSEAPTIAPWNFWVLLIPFFAWSSSWPFLNL 363
           I P+    +S++     W FW+LLI    ++  W FL L
Sbjct: 182 IAPIISGFISQSSIGWQWEFWILLI-LSGFNLFWAFLLL 219


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 66  LSLSTNSRGCFLTDFNSLC 122
           L L  NSR   LTDF S+C
Sbjct: 200 LLLHENSREIVLTDFGSIC 218


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 205 LMACSLCALPTSGFILPLAIMSLSEAPTI 291
           L ACS C + TS       I S S AP++
Sbjct: 108 LQACSTCTISTSSLSYSGTISSTSIAPSM 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 874,640
Number of Sequences: 5004
Number of extensions: 10737
Number of successful extensions: 41
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)