Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2231
         (364 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0279 - 23794964-23795111,23795486-23795634,23796120-237962...    36   0.007
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731...    36   0.007
07_01_0849 + 6896930-6896996,6897453-6897474,6897615-6897690,689...    36   0.013
11_06_0699 + 26394482-26396336,26396807-26397480,26397873-26398166     27   4.5  

>05_05_0279 -
           23794964-23795111,23795486-23795634,23796120-23796221,
           23796309-23796384,23796578-23796588
          Length = 161

 Score = 36.3 bits (80), Expect = 0.007
 Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 356 KKGQEEDQAKKGIRRTQK-FQGAIVGASLSDIMAKGNMKPEVGKAQREQAIK 204
           KK    +  KK  R T+K +  +IVGASL  I  K   KPEV  A RE A++
Sbjct: 62  KKDIHAEAVKKRRRTTKKPYSRSIVGASLEVIQKKRAEKPEVRDAAREAALR 113


>01_06_1123 + 34671365-34671883,34672366-34672625,34673045-34673143,
            34673237-34675178,34675588-34675658,34676158-34676307,
            34676963-34677038,34677131-34677232,34677707-34677855,
            34678214-34678364
          Length = 1172

 Score = 36.3 bits (80), Expect = 0.007
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = -3

Query: 356  KKGQEEDQAKKGIRRTQK-FQGAIVGASLSDIMAKGNMKPEVGKAQREQAIK 204
            KK    +  KK  R T+K +  +IVGA+L  I  K + KPEV  A RE A++
Sbjct: 1072 KKDIHAEAVKKRRRTTKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALR 1123


>07_01_0849 +
           6896930-6896996,6897453-6897474,6897615-6897690,
           6897775-6897876,6898156-6898304,6898637-6898784
          Length = 187

 Score = 35.5 bits (78), Expect = 0.013
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 356 KKGQEEDQAKKGIRRTQK-FQGAIVGASLSDIMAKGNMKPEVGKAQREQAIK 204
           KK    +  KK  R T+K +  +IVGA+L  I  K   KPEV  A RE A++
Sbjct: 88  KKDIHAEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAARESALR 139


>11_06_0699 + 26394482-26396336,26396807-26397480,26397873-26398166
          Length = 940

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 256 LAIMSLSEAPTIAPWNFWVLLIPFFAWS 339
           +A+  +  AP   PW  W+   P  AWS
Sbjct: 908 IAVTGVVSAPLQGPWLQWISRTPSAAWS 935


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,533,835
Number of Sequences: 37544
Number of extensions: 68170
Number of successful extensions: 183
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)