Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2230
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64859-1|AAC69092.2|  468|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AL032637-13|CAA21615.1|  709|Caenorhabditis elegans Hypothetical...    29   3.4  
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a...    29   3.4  
Z73906-6|CAA98113.1|  824|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z49074-2|CAE48829.1|  807|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z49073-9|CAE48845.1|  807|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z82288-5|CAB05324.1|  380|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>U64859-1|AAC69092.2|  468|Caenorhabditis elegans Hypothetical
           protein R09F10.3 protein.
          Length = 468

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/63 (33%), Positives = 28/63 (44%)
 Frame = +1

Query: 472 DPVSSKTTHSTMPSPK*TKTNCRKLTTIRMTHQTRVMRVLSPTVLLKRTTNLKRLDRCSN 651
           DP ++ T  +T  S     +     TT   T  T   RV SPT+    T     + RC+N
Sbjct: 85  DPAATTTAATTSASTTSITSTAATTTTTTTTGTTATGRV-SPTIP-PETLFHDAIKRCNN 142

Query: 652 CLF 660
           CLF
Sbjct: 143 CLF 145


>AL032637-13|CAA21615.1|  709|Caenorhabditis elegans Hypothetical
           protein Y43F8C.14 protein.
          Length = 709

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +3

Query: 60  VVMEKEHQPDSMATITMKPEY--PPSEVYSTSEPPPAYRHRVSTSV 191
           +V++K   P ++AT T KP    PP      SEPPPA++    +S+
Sbjct: 275 IVVKKLQAPIALATSTPKPAMCRPPKH----SEPPPAFQDSFVSSI 316


>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 192 protein.
          Length = 2957

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 3/129 (2%)
 Frame = +3

Query: 93   MATITMKPEYPPSEVYSTSEPPPAYRHRVST-SVQIAKIAALTVVASSFI--LGTFILAS 263
            +A  T KP  P  E  S +   P      +T +++I +      + S F    G  + AS
Sbjct: 2622 LAVATPKPSTPKVEKSSATPSAPETPSASATCNIKIGESLQFDDMISVFNRKTGELLAAS 2681

Query: 264  SWVAARSSCHQLEQLDAMLDKELALEGRAYGNDALVADEPLPLANAHALHGVPPMLSSVL 443
             W  A        +L A LD     +   + N AL A   L  A++  +    P +++ +
Sbjct: 2682 KWPKAT-------ELSAWLDANP--DYNVHANSALFAHLSLGGAHSDRIGDATPAVTASV 2732

Query: 444  PETSQPSSS 470
            P T  PS+S
Sbjct: 2733 PSTPTPSTS 2741


>Z73906-6|CAA98113.1|  824|Caenorhabditis elegans Hypothetical
           protein D2030.6 protein.
          Length = 824

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 351 YGNDALVADEPLPLANAHALH-GVPPMLSSVLPETSQPSSSRPSLFKD 491
           YG +  V D+P+ ++       G PP +S ++PE   P+     + KD
Sbjct: 292 YGIEITVDDQPIIISEGKPKQPGEPPQVSYIVPELCFPTGLTDEMRKD 339


>Z49074-2|CAE48829.1|  807|Caenorhabditis elegans Hypothetical
           protein ZK970.1b protein.
          Length = 807

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
 Frame = +3

Query: 318 LDKELALEGRAYGN-DALVADEPLPL---ANAHALHGVPPMLSSVLPETSQPSSSR 473
           L + L+ E R+Y + + L+  E  P+   +N  +L       SS+L +T QPSSSR
Sbjct: 8   LQRSLSHEMRSYSSLNPLLPSEDTPIQSFSNGVSLEEGKQASSSLLRDTGQPSSSR 63


>Z49073-9|CAE48845.1|  807|Caenorhabditis elegans Hypothetical
           protein ZK970.1b protein.
          Length = 807

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
 Frame = +3

Query: 318 LDKELALEGRAYGN-DALVADEPLPL---ANAHALHGVPPMLSSVLPETSQPSSSR 473
           L + L+ E R+Y + + L+  E  P+   +N  +L       SS+L +T QPSSSR
Sbjct: 8   LQRSLSHEMRSYSSLNPLLPSEDTPIQSFSNGVSLEEGKQASSSLLRDTGQPSSSR 63


>Z82288-5|CAB05324.1|  380|Caenorhabditis elegans Hypothetical
           protein ZK896.7 protein.
          Length = 380

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = +1

Query: 469 HDPVSSKTTHSTMPSPK*TKTNCRKLTTIRMTHQT--RVMRVLSPTVLLKRTT 621
           +DP ++ +   T   P  T T     TT+R T QT    M    PT  +  TT
Sbjct: 146 YDPTATTSAAPTTIPPTTTTTRAPTTTTVRKTTQTTATTMTTPKPTTTVSTTT 198


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,266,921
Number of Sequences: 27780
Number of extensions: 331099
Number of successful extensions: 1191
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)