Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2229
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.75 
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    28   1.3  
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   3.0  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    26   5.3  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    26   7.0  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    25   9.2  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    25   9.2  

>SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +3

Query: 102 RKK*SVGSLTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPP--TKPTRVSRNRSSKA 275
           R+K  + S     + K   + P K ++KRK  E+S     LH P  +   +  +N++ K 
Sbjct: 125 RRKQELVSKKAEASRKMEVKAPAKESKKRKVNELSQDVISLHSPKESNARKTKKNKNKKK 184

Query: 276 K 278
           K
Sbjct: 185 K 185


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = +3

Query: 114 SVGSLTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRSSKAKISI 287
           S+  L  S A K  Q+ P K  R+R      S + GL+P   PT  S+ RS +   S+
Sbjct: 342 SLSPLDHSSAEKEMQKAPAKNKRRRT----GSLETGLYPKESPT-PSKKRSKRVLWSL 394


>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 313

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +1

Query: 391 TVSKLRPTIRESIPSAEPKLPRSGSKSVS 477
           TVS   P+  E  PS+ P LP +GS+S S
Sbjct: 114 TVSIASPSTPELPPSSSPLLPPNGSESSS 142


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +1

Query: 394 VSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFSRTKIRSSCKARTS 537
           +++  PT  +  PS  P    S  KSV+RA+E     K   S     S
Sbjct: 194 ITEANPTCEKRKPSRSPSPMLSKKKSVARASENEPSAKQNKSFSGNDS 241


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +3

Query: 138 KATKTSQRKPIKLNRKRKCKEISSTQHGL---HPPTKPTRVSRNRSSKAKISI 287
           + TKT  R+  K+ R+RK +   +++       P  KP   SR    K   ++
Sbjct: 532 RVTKTQSRRETKVKRRRKARIQETSEESTVVNEPNEKPDGRSRRERKKVNYAL 584


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +1

Query: 397 SKLRPTIRESIPSAEPKLPRSGSKSVSR-ATEQFSRTKI-RSSCKARTSME*TNLTMSKG 570
           SK   T   S+    PK+ R GSK  +R A E+ S   + +S     TS E  + ++ + 
Sbjct: 292 SKSEKTSSMSVSIKPPKIIRKGSKEQNRIAKEKASGAPLTKSKSHNDTSTEYDSNSLRRS 351

Query: 571 RAN 579
           R+N
Sbjct: 352 RSN 354


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 165 PIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRSSKAKISITIML 299
           P +LNR R  KE    +  LH     +R +  +SS    SI++ L
Sbjct: 113 PKRLNRSRSSKEDMYRRRSLHGLPSLSRRNSKKSSTLSRSISLHL 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,428
Number of Sequences: 5004
Number of extensions: 54200
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)