Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2229
         (779 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1182 - 24610862-24611637,24612223-24612340,24612441-246141...    29   3.1  
05_05_0192 - 23128460-23128502,23129130-23129216,23129299-231294...    29   5.5  
03_05_0861 - 28348669-28348711,28349471-28349557,28349640-283497...    29   5.5  
03_02_0981 + 12917195-12917572,12917661-12917818,12918732-129187...    29   5.5  
08_02_0270 + 15108178-15108587,15108678-15108774,15109445-151094...    28   7.2  
07_03_0419 - 17993478-17993777,17994045-17994195,17994799-179950...    28   9.6  

>07_03_1182 -
           24610862-24611637,24612223-24612340,24612441-24614120,
           24614253-24614320,24615370-24615550
          Length = 940

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +1

Query: 379 SNPRTVSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFSRTKIRSS 519
           S+PRTV +   + R S P   PK P   SK  S A     RT+ + S
Sbjct: 558 SSPRTVQRKAESERRSRPPVSPKSP---SKKSSEAASPGGRTRTKPS 601


>05_05_0192 -
           23128460-23128502,23129130-23129216,23129299-23129443,
           23130812-23130872,23131046-23131164,23131320-23131374
          Length = 169

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 151 VFVALDHVNDPTDYFFRNVENLSWF 77
           VF   DH     D+FF++ EN+S+F
Sbjct: 52  VFSTKDHRQVKNDFFFKSAENISFF 76


>03_05_0861 -
           28348669-28348711,28349471-28349557,28349640-28349784,
           28350832-28350900,28351147-28351207,28351375-28351493,
           28351659-28351713
          Length = 192

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 151 VFVALDHVNDPTDYFFRNVENLSWF 77
           VF   DH     D+FF++ EN+S+F
Sbjct: 52  VFSTKDHRQVKNDFFFKSAENISFF 76


>03_02_0981 +
           12917195-12917572,12917661-12917818,12918732-12918765,
           12918942-12919074,12919167-12919221,12919281-12920064,
           12920440-12920769,12920788-12920895,12921259-12921678,
           12921775-12921847,12922291-12922376,12922873-12922992,
           12923086-12923156,12923350-12923449
          Length = 949

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 301 LSCCAHWNVPSYS*SNNSKPGQLWWVSNPRTVSKL 405
           LSC +H   P  + S  S+ G +W V   + +SKL
Sbjct: 750 LSCSSHSEEPKVNGSERSQAGSVWDVFRRQDISKL 784


>08_02_0270 +
           15108178-15108587,15108678-15108774,15109445-15109492,
           15109583-15109806,15111367-15111463,15111556-15111651,
           15112297-15112544,15112632-15112715,15112787-15113236,
           15114880-15115024,15115116-15115217,15115677-15115769,
           15117308-15117349,15119085-15119113,15119210-15119251,
           15119922-15119997,15120764-15120835,15121208-15121326,
           15121428-15121491,15121576-15123009
          Length = 1323

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 180 RKRKCKEISSTQHGLHPPTKPTRVSRNRSSKAKISITIMLIILLCPLERTQLQLVQQ 350
           R+++    S    GL+PP  P  +  N+     ++    LIIL+ P E  +L   QQ
Sbjct: 775 RQKELPHGSKLIMGLNPPFGPKAMLANKFIDKALTFKPKLIILIVPKEAERLDRKQQ 831


>07_03_0419 -
           17993478-17993777,17994045-17994195,17994799-17995036,
           17995133-17995343,17995440-17995618,17995735-17995833,
           17996646-17997531
          Length = 687

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +3

Query: 198 EISSTQHGLHPPTKPTRVSRNRSSKAKISITIMLI--ILLCPLERTQLQLVQQFQTRAAM 371
           EI+ST     PP  P  V+  RS + K+    +L+  I LCP+       +++ +   +M
Sbjct: 275 EINSTAPSSPPPPPP--VTETRSGRKKVLTVALLVPLIALCPVVIFCFAWIRRLRNHKSM 332

Query: 372 VGLKPKDS 395
             L+ KD+
Sbjct: 333 --LRKKDT 338


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,946,233
Number of Sequences: 37544
Number of extensions: 394932
Number of successful extensions: 1184
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)