Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2228
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical pr...    58   8e-09
U42848-7|AAA83612.2|  567|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z68000-4|CAA91972.4| 1342|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z50739-4|CAA90605.4| 1342|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF067622-3|ABD63225.1|  447|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z82051-8|CAB04814.1|  349|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AC006762-6|ABJ99063.1|  547|Caenorhabditis elegans Hypothetical ...    28   7.9  
AC006762-5|AAF60553.2|  684|Caenorhabditis elegans Hypothetical ...    28   7.9  

>Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical protein
            F33H2.5 protein.
          Length = 2144

 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 38/171 (22%), Positives = 70/171 (40%)
 Frame = -2

Query: 563  NAVCKVFSLDPTLDEEMTLVRRNLLRLIGVGEFSSAAEWREPCAACVLTELTCRVCNHXX 384
            NA+C+  S D T    +  +R N  RL+       A           ++ + C  C+   
Sbjct: 1979 NALCRALSCDQTSQLAVEGIRDNAKRLLH-NSVVEADMTPLRSTTLFVSNVFCNSCSQAS 2037

Query: 383  XXXXXXXXXXDTERPACLCPTCGTAYDNQEIEWRLIETMNKRTMAYTLQDLICSRCHQVK 204
                       T      C TC +  ++  I+  + + +N+   AY +QD  C++C  V+
Sbjct: 2038 NVFLSSTDEILT------CATCQSKLNSDVIDMMICDRLNQLLTAYQIQDHQCTKCKSVR 2091

Query: 203  RENLSVVCDCAGDFSLMVPVTEIKDQLMTFKTIAEYYQMPLLLEQIDFNLK 51
             + LS+ C+C   F   +   ++K +  T +T++      L  E   + LK
Sbjct: 2092 HDTLSMYCECCSQFIPQITPAQLKHEASTVETVSIVRNFALSSELATWVLK 2142


>U42848-7|AAA83612.2|  567|Caenorhabditis elegans Hypothetical
           protein C31H1.8 protein.
          Length = 567

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 6/32 (18%)
 Frame = -2

Query: 203 RENLSVVCDCAGDFSLM------VPVTEIKDQ 126
           R++  +VC+C GDFSL+      VPVT+I D+
Sbjct: 338 RQHEGLVCECLGDFSLIRHRPTSVPVTKILDE 369


>Z68000-4|CAA91972.4| 1342|Caenorhabditis elegans Hypothetical protein
            F13D2.1 protein.
          Length = 1342

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 251  AYTLQDLICSRCHQVKRENLSVVCDCAGDFSLMVPVTEIKDQLM 120
            A T   + C++CHQ   ENL  +    G F +   +  I + LM
Sbjct: 1202 AETTCSVKCNKCHQDSPENLQQLLSTNGIFGIRFELVSISNSLM 1245


>Z50739-4|CAA90605.4| 1342|Caenorhabditis elegans Hypothetical protein
            F13D2.1 protein.
          Length = 1342

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 251  AYTLQDLICSRCHQVKRENLSVVCDCAGDFSLMVPVTEIKDQLM 120
            A T   + C++CHQ   ENL  +    G F +   +  I + LM
Sbjct: 1202 AETTCSVKCNKCHQDSPENLQQLLSTNGIFGIRFELVSISNSLM 1245


>AF067622-3|ABD63225.1|  447|Caenorhabditis elegans Hypothetical
           protein F33E11.6b protein.
          Length = 447

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -2

Query: 329 CPTCGTAYDNQEIEWRLIETMNKRTMAYTLQDL-ICSRCHQVKRENLSVVCD 177
           C TC  AY  Q IE         +T  ++  D  +CS C++ ++E+  V CD
Sbjct: 348 CATCKIAYHPQCIEMPERMAALVKTYEWSCVDCRLCSICNKPEKEDEIVFCD 399


>Z82051-8|CAB04814.1|  349|Caenorhabditis elegans Hypothetical
           protein T23D5.11 protein.
          Length = 349

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -2

Query: 347 ERPACLCPTCGT-AYDNQEIEWRLIETMNKRTMAYTLQDLICSRCHQVKRENLSV 186
           ER     P  G  AY+   I WR +  ++  T+  T+Q  I   C Q+  E + +
Sbjct: 163 ERNITDIPVLGLIAYEGNSIRWRNVYGLSLMTLISTIQYSIILICGQIMYEGMRI 217


>AC006762-6|ABJ99063.1|  547|Caenorhabditis elegans Hypothetical
           protein Y42G9A.6b protein.
          Length = 547

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 388 QWLHTRHVSSVSTHAAHGSRHSAALLNS 471
           QW H   +   S+  AH SR+   +LNS
Sbjct: 482 QWTHVEEIPGCSSSLAHCSRNGTDVLNS 509


>AC006762-5|AAF60553.2|  684|Caenorhabditis elegans Hypothetical
           protein Y42G9A.6a protein.
          Length = 684

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 388 QWLHTRHVSSVSTHAAHGSRHSAALLNS 471
           QW H   +   S+  AH SR+   +LNS
Sbjct: 619 QWTHVEEIPGCSSSLAHCSRNGTDVLNS 646


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,129,716
Number of Sequences: 27780
Number of extensions: 307978
Number of successful extensions: 880
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)