Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2228
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    27   0.14 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.0  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 397 HTRHVSSVSTHAAHGSRHSAALLNSPTPIRRSRLRRTSVISSSKVGS 537
           H R  +S ST +     H A+L  +P P +  R R+    S S + S
Sbjct: 538 HRRRANSGSTSSGDDELHRASLSKTPQPPQCPRFRKLDSPSDSGIES 584


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 623 PVNCNTTHYRANWVPGPPFVNAV 555
           P +C+T  YR   V  P F  AV
Sbjct: 568 PSDCDTLEYRNGEVTTPLFTPAV 590


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +1

Query: 178 SQTTDKFSRFTW*HRLHIRSCSVYAI 255
           S     + R T  H LH+  C V  I
Sbjct: 82  SFNAQSWQRLTSLHELHVHGCKVLRI 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,398
Number of Sequences: 438
Number of extensions: 3619
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)