Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2225
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.2  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    26   3.9  
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb...    26   3.9  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    26   3.9  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   6.8  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    25   9.0  

>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 536 VDVCGLIIIKTKSSFLIKYINHYFSW 613
           +D CGL I  +K+ +L K   HY +W
Sbjct: 198 LDDCGLEISASKNEYLEKIKTHYKTW 223


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 21/81 (25%), Positives = 31/81 (38%)
 Frame = +2

Query: 68  EILCDYETKKKKKTFHEYLMLSRKLWSFDAEKRVRGRALNKSPSKTHTNIVL*CGINLFH 247
           +  CD   K KK   HE+ + S+K  +   E   +G  L  +  K H      C     H
Sbjct: 198 KFFCDLCVKNKKVFTHEHTLFSKKGLTKHNEVGDQGSDLEITGFKGHPK----CEFCNTH 253

Query: 248 FIRENCTVKETLQKHNILRYC 310
           F  ++   K   +KH     C
Sbjct: 254 FYDDDELFKHCREKHERCYIC 274


>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 62  NTEILCDYETKKKKKTFHEYLMLSRKLW 145
           N+E+   Y   KKK T H+++++ ++ W
Sbjct: 299 NSELFRKYGFTKKKGTPHDFVLIKKEHW 326


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 279 VSLTVQFSRIKWNKLMPHYNT 217
           V+ T++F+  K+N L+PHY T
Sbjct: 612 VNRTLKFTTAKYNGLVPHYLT 632


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 251 IRENCTVKETLQKHNILRYCTDFKAYQY 334
           ++E CTVK   Q  N+  Y +  K+Y +
Sbjct: 180 VQEKCTVKHRSQIENLDEYKSQAKSYYF 207


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 260 NCTVKETLQKHNILRYCTD 316
           +CT K+     NILRYC +
Sbjct: 617 SCTHKDIFDLQNILRYCDE 635


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,450,949
Number of Sequences: 5004
Number of extensions: 47996
Number of successful extensions: 109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)