Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2225
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.26 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.26 
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   3.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   5.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   9.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.8  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 14/58 (24%), Positives = 28/58 (48%)
 Frame = -2

Query: 294 LCF*SVSLTVQFSRIKWNKLMPHYNTIFVCVFEGDLFRARPRTRFSASKDHNFRLNIR 121
           +C   V L V F   + +K+ P    +F+ +    L   RP+ +F  ++  + R+ +R
Sbjct: 322 ICVTVVVLNVHFRSPQTHKMAPWVKRVFIHILPRLLVMRRPQYKFETNRYSSGRVLMR 379


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 14/58 (24%), Positives = 28/58 (48%)
 Frame = -2

Query: 294 LCF*SVSLTVQFSRIKWNKLMPHYNTIFVCVFEGDLFRARPRTRFSASKDHNFRLNIR 121
           +C   V L V F   + +K+ P    +F+ +    L   RP+ +F  ++  + R+ +R
Sbjct: 322 ICVTVVVLNVHFRSPQTHKMAPWVKRVFIHILPRLLVMRRPQYKFETNRYSSGRVLMR 379


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 109 ISRISDVEPKIVVL*CREAGAR 174
           +S I  ++PK + L C+E G +
Sbjct: 34  LSTILRLDPKFIALHCQEVGGK 55


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 528  HKPPPSFAITVQSSVTNTRT 469
            H PP S  IT+ ++ TN+ T
Sbjct: 1364 HAPPHSPQITLTATTTNSLT 1383


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 493 LNGYGEAWGRLMSSSGRLWSDNN 561
           L  +GE WG L S    ++ DN+
Sbjct: 286 LVNWGEQWGFLPSKDSLVFVDNH 308


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 98  KKKTFHEYLMLSRKLWSF 151
           KK TFHE  + +  LW +
Sbjct: 98  KKVTFHEMSIPNHYLWLY 115


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 141 CGPLMPRSG 167
           CGP+MP+ G
Sbjct: 134 CGPVMPQGG 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,497
Number of Sequences: 438
Number of extensions: 3550
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)