Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2224
         (462 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0394 - 17261008-17262476,17262554-17262743                       29   2.4  
08_01_0083 - 604175-605776                                             29   2.4  
08_01_0082 - 588269-588434,590800-591653                               29   2.4  
01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962     28   3.2  
05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218...    28   4.2  
12_01_0827 - 7662180-7662192,7662451-7662764                           27   5.6  
09_01_0132 + 1995438-1996178                                           27   5.6  
04_04_0532 + 26058100-26058229,26058355-26058559,26058678-260591...    27   5.6  
01_07_0315 - 42692539-42693260,42693357-42693609                       27   7.3  
09_02_0293 - 7015641-7015647,7015731-7015841,7015932-7016105,701...    27   9.7  
08_02_0393 + 16621137-16621139,16621392-16621583,16622559-166226...    27   9.7  
01_07_0317 + 42699035-42699305,42699411-42700132                       27   9.7  
01_06_0903 + 32862551-32864752,32865341-32865535,32866219-328665...    27   9.7  

>09_04_0394 - 17261008-17262476,17262554-17262743
          Length = 552

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 136 KPNEGRRRNRFVPSLLSDVWNVWLLIVAC 222
           KP    RR   +PS  S VW V LL+V C
Sbjct: 4   KPTRPHRRPPPLPSKTSGVWPVALLVVLC 32


>08_01_0083 - 604175-605776
          Length = 533

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 352 TPAPFFNRYHTQTQKLGLQTPPG*TSHI-QKIQEPFIDK 239
           TPAP F R+  +T  + +  P G   HI ++++ P + +
Sbjct: 218 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLERPEVQE 256


>08_01_0082 - 588269-588434,590800-591653
          Length = 339

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 352 TPAPFFNRYHTQTQKLGLQTPPG*TSHI-QKIQEPFIDK 239
           TPAP F R+  +T  + +  P G   HI ++++ P + +
Sbjct: 221 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLERPEVQE 259


>01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962
          Length = 774

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 233 EVTEHATINSQTFHTSDSSEGTKRFRRLPSF 141
           +++EH T  S+  HT  S+   ++ RRL SF
Sbjct: 696 KISEHDTDKSRRPHTKKSATSPRKMRRLSSF 726


>05_01_0281 +
           2186500-2187435,2187518-2187616,2187707-2187772,
           2187850-2188266
          Length = 505

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 333 LKNGAGVSNHMWHRLKNDDGDDKPCLN 413
           L  G G +NH  H   +DD DD P L+
Sbjct: 56  LMRGGGAANHHHHDDDDDDDDDVPWLH 82


>12_01_0827 - 7662180-7662192,7662451-7662764
          Length = 108

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = -3

Query: 235 PKLQNTLLLTARH--STHPTVAKERSDFVACPR 143
           PK Q T++ +AR   +T   + ++RSD  ACPR
Sbjct: 25  PKTQQTVVPSARGPTATDQVLPRQRSDRSACPR 57


>09_01_0132 + 1995438-1996178
          Length = 246

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 390 GDDKPCLNCVIWGGPVPNSPYS 455
           GD++  L+C IWG PV   P S
Sbjct: 130 GDNRFELSCAIWGNPVAPPPTS 151


>04_04_0532 +
           26058100-26058229,26058355-26058559,26058678-26059157,
           26059262-26059354,26059526-26059636,26059720-26059792,
           26060072-26060208,26061040-26061097
          Length = 428

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 332 PVSHADAEARVTDAARVDLAHTEDPGAVH*QAAE 231
           P +   A  R T  A+VD A  EDPG +   A E
Sbjct: 87  PQAPPPAPTRATKKAKVDAAKNEDPGGMSAPAKE 120


>01_07_0315 - 42692539-42693260,42693357-42693609
          Length = 324

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +3

Query: 252 GSWIFCMCEVYPGGVC-NPSF 311
           G   FCMC+ YPG  C +P F
Sbjct: 79  GCKTFCMCDFYPGVSCGDPRF 99


>09_02_0293 -
           7015641-7015647,7015731-7015841,7015932-7016105,
           7016210-7016855,7017106-7017235
          Length = 355

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 432 GPPKLHNLNMVYRRRRRSSTGA 367
           GPPKLH+L    +R+RR  T A
Sbjct: 44  GPPKLHHLPPQGQRKRRKLTHA 65


>08_02_0393 +
           16621137-16621139,16621392-16621583,16622559-16622612,
           16623041-16623160,16623280-16623501,16623594-16623650,
           16623993-16624046,16624395-16624426,16624888-16625023,
           16625108-16625278,16625430-16625661,16626018-16626022
          Length = 425

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 216 SVFCNFGGLSMNGSWIFCMCEVYPGGVCNPSF 311
           S  CNF  LS+ G +I+ + E++   VC+ SF
Sbjct: 82  SKICNFHTLSLLGYFIYNVLEIFIIIVCSISF 113


>01_07_0317 + 42699035-42699305,42699411-42700132
          Length = 330

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = +3

Query: 264 FCMCEVYPGGVC-NPSF 311
           FCMC+ YPG  C +P F
Sbjct: 89  FCMCDFYPGVSCGDPRF 105


>01_06_0903 +
           32862551-32864752,32865341-32865535,32866219-32866523,
           32866664-32866849,32867137-32867314,32867548-32867574
          Length = 1030

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = -3

Query: 400 LSSPSSFFNRCHIWFDTPAPFFNRYHTQT 314
           LSSPS   +R    FDT  PF  R HTQ+
Sbjct: 626 LSSPSPRHSRAS--FDTAMPFTPRRHTQS 652


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,649,238
Number of Sequences: 37544
Number of extensions: 242036
Number of successful extensions: 635
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)