Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2223
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy...    30   0.25 
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    27   1.8  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    27   2.3  
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    27   3.1  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    26   4.1  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       26   4.1  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   5.4  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    25   9.5  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    25   9.5  

>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 21/68 (30%), Positives = 32/68 (47%)
 Frame = +3

Query: 222 LDPLHLECEVKANPPAYKFIWYFNDSEIKSNSVWGENVTSQVLYVEEVTREHAGRYSCVA 401
           + P+H+E     +P  YKF       E+ S+ V+ + V    L+VE V  E     SCV 
Sbjct: 126 VSPVHIEDF--QSPQIYKFKNLSLRDEMVSDCVFADEVPLASLFVENVCNETIPSQSCVR 183

Query: 402 VNSIGETR 425
           +    +TR
Sbjct: 184 LKINDKTR 191


>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 386 SAGVFPGHFLNVQYLAGNILPPY 318
           S GV+ G  LNV +L+ NI P Y
Sbjct: 387 SVGVYTGAGLNVTWLSANIAPHY 409


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = -2

Query: 362 FLNVQYLAGNILPPYAIRFYFTIIKIPYKFVSRRICFDLAFQVQRIQFDHLIQFTVTHSN 183
           FLN+QY    ++  +    ++    +P + V +R+  DL    +    D  I F  T  N
Sbjct: 446 FLNIQYRMHELISKFPSDTFYDSKLVPAEEVKKRLLMDLENVEETELTDSPIYFYDTLGN 505

Query: 182 Y 180
           Y
Sbjct: 506 Y 506


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 320 YAIRFYFTIIKIPYKFVSRRIC 255
           Y  RF   +I++P KF  RR+C
Sbjct: 304 YLNRFEILVIRVPSKFELRRLC 325


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 276 FIWYFNDSEIKSNSVWGENVTSQVLYV 356
           ++ Y+N+ ++ SNS W ENV+ + L +
Sbjct: 140 WLTYYNEFQLSSNSEW-ENVSKEFLEI 165


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 99  TNHVMAPSRNSKADVITLNVTYSPLLEVVRVGDGKLNE 212
           TN    PS  + A++  L    + +LEV+ + D +LN+
Sbjct: 31  TNDSWGPSGTAMAEIAELTYDQNEMLEVMDIIDRRLND 68


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 355 TYNTWLVTFSPHTLFDF 305
           TYN WL  +S  TLFD+
Sbjct: 361 TYNGWLAQWSMITLFDY 377


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 105 HVMAPSRNSKADVITLNVTYSPLLEVVRVGDGKLNEV 215
           H++ P +N K+  ++   T++ L+ +    D KLN V
Sbjct: 279 HIVVPEKNLKSLYLSSPGTFNILISINHRDDRKLNPV 315


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -2

Query: 347 YLAGNILPPYAIRFYFTIIKIPYK--FVSRRICFDLA 243
           YLAG  + PY+I  +  + K+  K   +  R+ FD A
Sbjct: 702 YLAGTKVCPYSIPLWLLLAKLEEKQSVIRARVVFDRA 738


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,619,253
Number of Sequences: 5004
Number of extensions: 53096
Number of successful extensions: 170
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)