Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2223
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0205 + 1475628-1475969,1477446-1477642,1478476-1478611,147...    29   2.4  
10_08_1004 + 22170866-22171442,22172424-22173337,22173426-22173566     27   9.8  
06_03_1510 + 30665857-30666038,30666137-30666236,30666358-306664...    27   9.8  

>05_01_0205 +
           1475628-1475969,1477446-1477642,1478476-1478611,
           1478706-1479178,1479287-1479404,1479762-1479911,
           1480039-1480125,1480536-1480829
          Length = 598

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = +3

Query: 225 DPLHLECEVKANPPAYKFIWYFNDSEIKSNSVWGENVTSQVLYVEEVTREH--AGRYSCV 398
           D L  +  V   PP  +++   ND++     VWGE +T   +    +T E   A     V
Sbjct: 250 DELKGKIIVSTKPPK-EYLQTKNDADADEAGVWGEEITDDKVAATAMTTEEKCAAAEEAV 308

Query: 399 AVNSIGETRAESFT 440
           A  ++ E   E+ T
Sbjct: 309 AAAAVDEEMQEAET 322


>10_08_1004 + 22170866-22171442,22172424-22173337,22173426-22173566
          Length = 543

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 25/98 (25%), Positives = 39/98 (39%)
 Frame = +3

Query: 27  STAISYLELHPSVGDDGATLACVATNHVMAPSRNSKADVITLNVTYSPLLEVVRVGDGKL 206
           S  IS L    S G D   L+ +    ++  S       ++L       +E + V  GKL
Sbjct: 180 SKPISSLRRDVSAGTDMEKLSLIQVASLIESSAKKGITELSLRGKLVDQIEWLPVSLGKL 239

Query: 207 NEVVELDPLHLECEVKANPPAYKFIWYFNDSEIKSNSV 320
            +V ELD    E  + A P     + Y    ++ SN +
Sbjct: 240 QDVTELD--LSENRIMALPSTIGSLRYLTKLDLHSNQL 275


>06_03_1510 +
           30665857-30666038,30666137-30666236,30666358-30666438,
           30666514-30666618,30666722-30666916,30667440-30667501,
           30667870-30667885,30668007-30668068,30668933-30668951
          Length = 273

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 1/98 (1%)
 Frame = -2

Query: 512 LQLKASLTNLI-PWWEHSRWVKHGHSEAFGSSFADRVHGDTRISAGVFPGHFLNVQYLAG 336
           LQ  A+++ L+   W  SRW +H H         D       ++AG+F    L    +A 
Sbjct: 26  LQAFAAVSALLYAAWILSRWARHHHLH-LQDLLPDLWFVCALMAAGLFYCLLLLAGCVAA 84

Query: 335 NILPPYAIRFYFTIIKIPYKFVSRRICFDLAFQVQRIQ 222
            I  P  + FY TI+ +    +   +  DL F    IQ
Sbjct: 85  EINSPCFLCFY-TILAVVMMLLEAALAADLFFNKHWIQ 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,155,568
Number of Sequences: 37544
Number of extensions: 390104
Number of successful extensions: 1005
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)