Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2218
(733 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi... 29 0.52
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 29 0.68
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 27 2.8
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 27 3.6
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 26 4.8
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 26 4.8
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces... 25 8.4
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 25 8.4
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.4
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 8.4
>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 624
Score = 29.5 bits (63), Expect = 0.52
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 397 DNHREALKQDVDLDGKISSNEISGLLKQKDNMQDANQKPLFN 522
D+ R QD+D D K+ S ++S + Q N+ + + PL N
Sbjct: 466 DDLRNVFNQDLDFDEKMFSRQLSLVKGQAYNIVEVLKNPLMN 507
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 29.1 bits (62), Expect = 0.68
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 6/106 (5%)
Frame = +2
Query: 119 TIFETQSG---VPTMKTTEMNYTLGTRCPLS*IQWTSTEISPNICTKCFDRLEACSVTYS 289
T +ET+S VPT ++T T L+ +S+ S + T D + T +
Sbjct: 252 TFYETKSSTSSVPTQTIDSSSFTSSTPVSLTSSSTSSSGSSQDSTT--IDSTPSTIATST 309
Query: 290 HFSTTKTLIF---PESATCLPTKVPTTVTSEITI*NPAMTITERLS 418
TT + I P ++ LPT P+++++E+ + TIT+ S
Sbjct: 310 LQPTTSSPITTSAPSLSSALPTTYPSSLSTEVEVEYFTKTITDTSS 355
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -3
Query: 356 LEPSSEGKSLIPGKSKFSSWKNDCTSPNMLPNDRNISCICLVKSLWR 216
L P G+ +IP + W C S NM P D N + L+K R
Sbjct: 500 LIPVKNGRRVIP-RGLIGRWNRICASHNMDPEDVNNASPELLKEFVR 545
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 26.6 bits (56), Expect = 3.6
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +1
Query: 139 WGSDDEDDGDELYSRNE 189
W +D+EDDG++L S +E
Sbjct: 348 WVADEEDDGEDLESEDE 364
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = -2
Query: 651 VTVSSVTSLPFLTILPCLY--CSIR 583
+ S SLPFLT+ PC + CS+R
Sbjct: 48 IAQKSNISLPFLTLSPCSFTICSLR 72
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 603 CLYCSIRFLNTCCNNSLTE*SS 538
CL CS + ++T C+NSL SS
Sbjct: 561 CLNCSNKIIHTVCHNSLIYFSS 582
>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -2
Query: 660 GPDVTVSSVTSLPFLTILPCLYCSIRFLNTCCNNSLT 550
G D V +P + L CLY +RF N N T
Sbjct: 116 GTDAFSGLVIGIPTMISLVCLYPMLRFANPKSANGYT 152
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +1
Query: 370 RDYYLKPGYDNHREALKQDVDLDGKISSNEISGLLKQKDNMQDANQKPLFNGNL 531
R + P N+ LK++ L K ++ ++S + + + KPLF+G L
Sbjct: 145 RSRKINPQKGNNNNLLKENKSL--KTTAKDLSDISSSSMKKANNSSKPLFSGKL 196
>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 657
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 112 PRNDFRNPIWGSDDEDDGDELYSRNEMSA 198
P ++ R P +++EDD DE S N S+
Sbjct: 103 PLSEDRKPTSNNEEEDDADEAKSSNADSS 131
>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -2
Query: 660 GPDVTVSSVTSLPFLTILPCLYCSIRFLNTCCNNSLT 550
G D V +P + L CLY +RF N N T
Sbjct: 116 GTDAFSGLVIGIPTMISLVCLYPMLRFANPKSANGYT 152
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,282,181
Number of Sequences: 5004
Number of extensions: 72790
Number of successful extensions: 211
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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