Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2217
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom...    29   0.81 
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    26   5.7  
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    25   7.5  
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    25   9.9  

>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 470

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 262 RRGRLALAARTHTTNKLCLTHYPGAGCFI 176
           RR  L LAA  H    +C  H P AG F+
Sbjct: 359 RRNALLLAADKHLPKSVCKYHSPKAGLFL 387


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
 Frame = -3

Query: 598 GSIFSTRYQNDI*FELRSVYRNVD*L-----ERAGVAPVSIAIQPTDPSCSERPRPT 443
           GSIF   Y N +   LRSV  N   +       A + PV  A+     +  E P PT
Sbjct: 299 GSIFGGAYANSLANSLRSVENNTQQVFFAFTHDANIIPVETALGFFTDNTPENPLPT 355


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 262 RRGRLALAARTHTTNKLCLTHYPGAGCFI 176
           RR      A  +  N +C+ H P AG F+
Sbjct: 362 RRNAFLNVANKYLPNSVCIYHVPRAGLFL 390


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -1

Query: 441 EPATRRVIAQPFPRDIRSRNQAH-SIASCRIASHRPGRRVSEKRTNKT 301
           E +TRR     FP+  ++  +A+ S+ SC I  HRP + ++ K    T
Sbjct: 17  EESTRR-----FPKSYQTWRKAYDSMKSCPITFHRPSQALALKGIGPT 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,351,190
Number of Sequences: 5004
Number of extensions: 41280
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)