Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2217
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0571 - 17269005-17269927,17270433-17270688,17272492-17273301     31   1.1  
04_03_0573 + 17329365-17330440,17330505-17331201                       30   1.5  
02_01_0144 - 1038547-1039650                                           30   1.5  
08_02_0880 + 22203440-22204324,22204763-22204876,22204964-222054...    29   2.6  
04_04_0301 + 24251287-24251425,24252180-24252249,24252610-24253555     28   5.9  
03_05_0032 + 20043252-20044361                                         28   5.9  
01_07_0327 + 42752697-42752711,42753937-42754127,42754822-427549...    28   7.8  

>04_03_0571 - 17269005-17269927,17270433-17270688,17272492-17273301
          Length = 662

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
 Frame = +3

Query: 327 PVVLGD--AMR----CDTKRYCAPDSCYECRAGKV-ER*RVASLVR 443
           P ++GD  AM     C    +CAP+  Y CR GKV    RV SL+R
Sbjct: 588 PAIVGDGCAMEGLCVCSDDSHCAPELGYFCRPGKVFTEARVCSLLR 633


>04_03_0573 + 17329365-17330440,17330505-17331201
          Length = 590

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
 Frame = +3

Query: 327 PVVLGD--AMR----CDTKRYCAPDSCYECRAGKV 413
           PV++GD  AM     C    +CAP+  Y CR GKV
Sbjct: 526 PVIVGDGCAMEGLCVCSDDSHCAPEKGYFCRPGKV 560


>02_01_0144 - 1038547-1039650
          Length = 367

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -3

Query: 517 RAGVAPVSIAIQPTDPSCSERPRPTRTSDATRYRSTFPARHS 392
           RA   P+++  +PT  S S+ P P R S+  R+R T PA+ S
Sbjct: 9   RAAKLPLAVLAKPTHASASQPPAPPRPSN-PRHRKT-PAKAS 48


>08_02_0880 +
           22203440-22204324,22204763-22204876,22204964-22205455,
           22205646-22205819,22206589-22206978,22209927-22210022,
           22210645-22210760,22210872-22211042,22211126-22211285,
           22211388-22211573,22211665-22211793,22211918-22211996,
           22212159-22212268
          Length = 1033

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/57 (38%), Positives = 26/57 (45%)
 Frame = -3

Query: 496 SIAIQPTDPSCSERPRPTRTSDATRYRSTFPARHS*QESGAQYRFVSHRIASPRTTG 326
           S A  P  P+ SE P P   + A R R    AR +   SGA+      R  S RTTG
Sbjct: 140 SPAPAPRAPTPSEPPPPREAAMAARERRRIQARLNRSRSGARRALKGLRFIS-RTTG 195


>04_04_0301 + 24251287-24251425,24252180-24252249,24252610-24253555
          Length = 384

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -1

Query: 480 PQTRAAARGLVLREPATRRVIAQPFPRDIRSRNQAHSIASCRIASHRPGRR-VSEKRT 310
           PQ R   R   LR P      +      +R   +A + A+C  AS + GRR +S  RT
Sbjct: 2   PQRREPPRAAGLRAPPAAAAASSRRTPPLRVAGRAAAAAACPAASDKRGRRQISLDRT 59


>03_05_0032 + 20043252-20044361
          Length = 369

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 354 CDTKRYCAPDSCYECRAGKV 413
           C    +CAP+  Y CR GKV
Sbjct: 340 CSQDAHCAPEQGYVCRPGKV 359


>01_07_0327 +
           42752697-42752711,42753937-42754127,42754822-42754919,
           42755792-42755880
          Length = 130

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 316 LFAYPSSWAMRCDATRSDTVRLIPATNVAR 405
           +FA   +WA  CD  RS    ++P TNV R
Sbjct: 33  VFASSPTWAQLCDRVRSKMEHVVP-TNVMR 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,644,188
Number of Sequences: 37544
Number of extensions: 285735
Number of successful extensions: 677
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)