Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2217
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006733-4|AAF60486.1|  319|Caenorhabditis elegans Dehydrogenase...    30   1.3  
AF016685-15|AAG24139.2|  321|Caenorhabditis elegans Hypothetical...    29   2.3  
Z49067-1|CAA88849.2|  376|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AF025462-8|AAB71004.1|  121|Caenorhabditis elegans Hypothetical ...    27   9.2  

>AC006733-4|AAF60486.1|  319|Caenorhabditis elegans Dehydrogenases,
           short chain protein9 protein.
          Length = 319

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 444 VGRGLSLQLGSVGWIAILTGATPARSNQS 530
           +GRG++LQLG  G    +TG  P  S  S
Sbjct: 17  IGRGIALQLGEAGATVYITGRKPEESLNS 45


>AF016685-15|AAG24139.2|  321|Caenorhabditis elegans Hypothetical
           protein F59E11.2 protein.
          Length = 321

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 444 VGRGLSLQLGSVGWIAILTGATPARSN 524
           +GRG++LQLG  G    +TG  P  S+
Sbjct: 19  IGRGIALQLGEAGATVYITGRRPELSD 45


>Z49067-1|CAA88849.2|  376|Caenorhabditis elegans Hypothetical
           protein C44F1.2 protein.
          Length = 376

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -2

Query: 500 SQYCDPTHRPELQREASSYANQRRDALSLNLSRATFVAGIRRTVSLRVAS 351
           SQ+CD      +  + S+         +  L+RATF  GI++ +  RV S
Sbjct: 282 SQFCDDIIAGAINLKQSAMTQSLNQNSAFVLTRATFALGIQKPIVNRVQS 331


>AF025462-8|AAB71004.1|  121|Caenorhabditis elegans Hypothetical
           protein K10F12.6 protein.
          Length = 121

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 204 LTTPVLAVSLNTATFKLPKPYTQQRGRSLKLSL 106
           LTTP+  ++    + K+PK YT +   +++ SL
Sbjct: 30  LTTPIAPIAPELYSLKVPKDYTPETTSTMRRSL 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,139,973
Number of Sequences: 27780
Number of extensions: 236705
Number of successful extensions: 628
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)