Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2212
         (448 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   138   4e-34
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    52   5e-08
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    30   0.19 
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    27   0.99 
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    27   0.99 
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   0.99 
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   2.3  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    26   2.3  
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    25   4.0  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   4.0  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    25   7.0  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    24   9.3  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    24   9.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    24   9.3  
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    24   9.3  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  138 bits (334), Expect = 4e-34
 Identities = 63/121 (52%), Positives = 89/121 (73%)
 Frame = +2

Query: 83  KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHL 262
           K+ YF K+  L ++Y   F+V  DNV SQQM  +R  LRG++ ++MGKNTM+R+A++  +
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67

Query: 263 DNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPL*VVIPAHNTG 442
           ++ P LE+LLP ++GNVGFVFT  DL EVR+ ++ N + APARP AIAPL V +PA NTG
Sbjct: 68  NDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTG 127

Query: 443 L 445
           +
Sbjct: 128 M 128


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 51.6 bits (118), Expect = 5e-08
 Identities = 49/143 (34%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
 Frame = +2

Query: 20  KFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLR 199
           K  RS   TL++  ++     K+  F  + Q LD +   +I    N+ +  +++IR   +
Sbjct: 3   KSRRSKVLTLAQTEKKGHEG-KAALFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDWK 61

Query: 200 GSSIVLMGKNTMMRKAI-----KDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLL 364
           GS I  MGK  +M KA+     ++H +N   L KLL    G VG +FT     EV     
Sbjct: 62  GSRI-FMGKTKVMAKALGHTPEEEHAENVSKLTKLL---HGAVGLLFTNSKPDEVIG-YF 116

Query: 365 ENKVQAP-ARPGAIAPL*VVIPA 430
           E+ VQ   AR GA+AP   VIPA
Sbjct: 117 ESFVQNDFARAGAVAPFTHVIPA 139


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 29.9 bits (64), Expect = 0.19
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 213 CSWEKTQ*CAKPSKTTWTTIQPSRNCCHTSRATLAS 320
           CS EKT  C++  K+  T+ +PS  CC   ++T+ +
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS--CCSNGKSTVCA 297


>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.5 bits (58), Expect = 0.99
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 279 RAGLLSRWSLMALRIIVFFPMSTILEPR 196
           +A     W LM + +++F  +  ILEPR
Sbjct: 162 QASTWGTWGLMGINVVLFVVVQLILEPR 189


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 27.5 bits (58), Expect = 0.99
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -2

Query: 444 SPVLWAGMTTHNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLP 304
           S V  +G   ++ +MAP R+G+W   +N  S +  R+  +  K  +P
Sbjct: 224 SSVFSSGNHAYHASMAPKRSGSWR-HTNFHSTSHPRAASIGNKSGIP 269


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 0.99
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -2

Query: 357 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRII 232
           L +T  +S    + PTLP +   + S +G+LSR + + ++ I
Sbjct: 35  LKQTVLQSSSFKSFPTLPRLAARNISNSGILSRTTPVIIKQI 76


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -2

Query: 372  LFSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRIIVFFPMST 211
            LFSN + R +    R+ T     L+ GN++     +  W+L+A   I  F  +T
Sbjct: 1512 LFSNCICRDNITLSRIGTNCMQQLLSGNAYRFE--VKDWNLVADMFIELFKETT 1563


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +3

Query: 246 PSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCESSF 425
           PS + W T+  SR     SR   +S SP+  S +        + K  L L+ +   ES++
Sbjct: 187 PSNSYWKTVIGSREMFEDSRKKTSSPSPSFASSKDAGTIPAIQKKKSL-LIEMMETESTY 245


>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +2

Query: 131 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPA 277
           K  IVGA NVGS     + +S   + IV++  N   +KA  + +D N A
Sbjct: 22  KIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLN--KKKAEGEAMDLNHA 68


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 15/64 (23%), Positives = 28/64 (43%)
 Frame = +3

Query: 249 SKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCESSFP 428
           S T  T+   +   C TS + L + +P  ++  + TNC  T + +     P+     +  
Sbjct: 518 SSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNC-TTSTSVPYTSTPVTSSNYTIS 576

Query: 429 PTTP 440
            +TP
Sbjct: 577 SSTP 580


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = -2

Query: 441 PVLWAGMTTHNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSFSRAG 271
           PV    +    G++ P  AGAW L  N L    T   +   +NT P  PL  G  FS   
Sbjct: 142 PVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIFSEEE 198

Query: 270 L 268
           L
Sbjct: 199 L 199


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 132 FGYSSKSWMILTK*LDFQVALSSLP 58
           F Y++K+W ++ K L  QV    +P
Sbjct: 317 FAYATKTWHLIEKNLPTQVGFLPIP 341


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -1

Query: 313 NVALDVWQQFLEGWIVVQVVF 251
           N  +  W +F +GW +  V F
Sbjct: 431 NTYIGRWHKFFQGWFITLVTF 451


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 124  LVQELDDLNEVVRLPSSLVLPTHPG 50
            L QE+  L   +RLP+ L  P++ G
Sbjct: 931  LTQEITQLGSNMRLPTKLTRPSNDG 955


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 376 DFVLQQFVTDLNEVSAGEH 320
           D V+QQ V  LN V AG++
Sbjct: 419 DIVIQQVVEQLNHVIAGDY 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,090,677
Number of Sequences: 5004
Number of extensions: 41264
Number of successful extensions: 125
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)