Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2212
         (448 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   187   4e-48
U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical pr...    46   2e-05
Z81117-4|CAB03319.1|  249|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ...    29   1.5  
U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical pr...    28   2.7  
Z81522-2|CAB04238.1|  415|Caenorhabditis elegans Hypothetical pr...    27   6.2  
X70833-1|CAA50181.1|  575|Caenorhabditis elegans Cytoplasmic int...    27   6.2  
U29379-3|AAF99979.3|  558|Caenorhabditis elegans Intermediate fi...    27   6.2  
Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U80441-1|AAB37651.1|  647|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  187 bits (455), Expect = 4e-48
 Identities = 83/131 (63%), Positives = 107/131 (81%)
 Frame = +2

Query: 56  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 235
           M RED++TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++RG + +LMGKNTM
Sbjct: 1   MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60

Query: 236 MRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPL* 415
           +RKA++ HL  NP+LEKLLPHI  NVGFVFT+ DL E+R KLLEN+  APA+ GAIAP  
Sbjct: 61  IRKALRGHLGKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCD 120

Query: 416 VVIPAHNTGLG 448
           V +P  NTG+G
Sbjct: 121 VKLPPQNTGMG 131


>U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical
           protein F10E7.5 protein.
          Length = 220

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 2/135 (1%)
 Frame = +2

Query: 29  RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS 208
           R    +L+++ ++ K T K+N   ++   +D+Y   FI    N+ S +   IR   + +S
Sbjct: 6   RDKNVSLTKVKKKTKDT-KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENS 64

Query: 209 IVLMGKNTMMRKAIKDHLDNNPA--LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQA 382
               GKN ++  A+     +  A  L K    +KG  G +FT     EV  +  E   + 
Sbjct: 65  RFFFGKNNVISIALGKQKSDEYANQLHKASAILKGQCGLMFTNMSKKEVEAEFSEASEED 124

Query: 383 PARPGAIAPL*VVIP 427
            AR G +A   VV+P
Sbjct: 125 YARVGDVATETVVLP 139


>Z81117-4|CAB03319.1|  249|Caenorhabditis elegans Hypothetical
           protein T06E6.10 protein.
          Length = 249

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/56 (23%), Positives = 21/56 (37%)
 Frame = +3

Query: 204 PVSCSWEKTQ*CAKPSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRT 371
           P  C+  +   C      T   ++P+  C H +  T   CSP +        C+ T
Sbjct: 109 PAGCAMVRPSGCMDSPTMTGCELKPT--CIHVNACTTTKCSPGKKCALHTVQCFTT 162


>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
           protein Y46B2A.3 protein.
          Length = 1145

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 420 TTHNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPT 310
           TT      P  AG WT+ +N ++R  TR P    +PT
Sbjct: 192 TTRGFTQRPTAAG-WTIRANGITRGQTRVPGTTREPT 227


>U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical
           protein C33G8.12 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +2

Query: 11  LVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDE 124
           L+ K   S ++ +SR+ +EDK +  SN+++K  QLL E
Sbjct: 156 LLWKLGESIFSDVSRLSKEDKNSMISNFYIK-WQLLME 192


>Z81522-2|CAB04238.1|  415|Caenorhabditis elegans Hypothetical
           protein F32B4.1 protein.
          Length = 415

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = -1

Query: 403 NGTRTSWSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQFLEGWIVVQVVFDGFAHHCVF 224
           NGTR       +L     DL E S   HE+   LDVW++ L      Q +  G++ H + 
Sbjct: 233 NGTRAP-----LLSSSARDLRE-SREPHESGWNLDVWKRNLNECRKGQYLLHGYSGHGIL 286

Query: 223 S 221
           S
Sbjct: 287 S 287


>X70833-1|CAA50181.1|  575|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 575

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
 Frame = +2

Query: 29  RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISL---R 199
           RS Y  +S   R D  +W   Y +K+ ++  +  +  +    N   ++++++R +L   R
Sbjct: 285 RSEYDHVSNTTRTDIESW---YKLKVQEIHTQNSRNCL--EQNYAREEVKRLRTTLGDMR 339

Query: 200 GSSIVLMGKNTMMRKAIKD 256
           G    L G+N ++ K I+D
Sbjct: 340 GKMADLEGRNLLLEKQIED 358


>U29379-3|AAF99979.3|  558|Caenorhabditis elegans Intermediate
           filament, a protein 4 protein.
          Length = 558

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
 Frame = +2

Query: 29  RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISL---R 199
           RS Y  +S   R D  +W   Y +K+ ++  +  +  +    N   ++++++R +L   R
Sbjct: 268 RSEYDHVSNTTRTDIESW---YKLKVQEIHTQNSRNCL--EQNYAREEVKRLRTTLGDMR 322

Query: 200 GSSIVLMGKNTMMRKAIKD 256
           G    L G+N ++ K I+D
Sbjct: 323 GKMADLEGRNLLLEKQIED 341


>Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical
           protein ZK593.5 protein.
          Length = 1326

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = +3

Query: 162 ARNRCSRSVSRYVAPVSCSWEKTQ*CAKPSKTTWTTIQPSRNCCHTSRATLASCSPAETS 341
           A +R S S S+     +    + Q  A P K + TT   S+      R +LA   PAE +
Sbjct: 155 ASSRASASASKPRPQFTAPDPRRQSLAPPKKASTTTAPVSKPSLSKPRQSLAPSKPAEVT 214


>U80441-1|AAB37651.1|  647|Caenorhabditis elegans Hypothetical
           protein F27C1.6 protein.
          Length = 647

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 170 QMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKLL 292
           +M   RI  RGS +   G+N   ++ ++ H   NP ++KLL
Sbjct: 240 EMDLQRIMERGS-LKHRGQNQKFKQMLEKHASRNPEVKKLL 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,779,936
Number of Sequences: 27780
Number of extensions: 242509
Number of successful extensions: 850
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)