Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2212
         (448 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   0.66 
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   2.7  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   3.5  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   3.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   4.6  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   4.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   6.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   6.1  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   8.1  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   8.1  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   8.1  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   8.1  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   8.1  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   8.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 0.66
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +1

Query: 202 LQYRAHGKKHNDAQSHQRPPGQQSSPRETVATHQGQRWLR 321
           LQ   H  +    Q H RP  QQ   ++     Q +R LR
Sbjct: 144 LQNHHHHLQSTAVQDHHRPYQQQQQQQQRQQQRQEERRLR 183


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 330 RVNTKPTLPLMCGNSFSRAGLL 265
           R +T P    +CG +FSR  LL
Sbjct: 37  RTHTLPCKCHLCGKAFSRPWLL 58


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 297 CGNSFSRAGLLSRWSLMALRIIVFF-PMSTIL 205
           CG  +   GLLS   L+   I V+F P+  I+
Sbjct: 202 CGTDYFNRGLLSASYLVCYGIWVYFVPLFLII 233


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 297 CGNSFSRAGLLSRWSLMALRIIVFF-PMSTIL 205
           CG  +   GLLS   L+   I V+F P+  I+
Sbjct: 78  CGTDYFNRGLLSASYLVCYGIWVYFVPLFLII 109


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 80  WKSNYFVKIIQLLDEYP 130
           W+   F  ++++LDE+P
Sbjct: 862 WRHWKFPNLVEVLDEFP 878


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 392 DELELGLCSPTVCHGPQR 339
           D +E G+  PT C G  +
Sbjct: 361 DAVEYGIIGPTTCMGDHK 378


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = +1

Query: 223 KKHNDAQSHQRPPGQQSSPRETVATHQG 306
           ++ + A S Q  PG     ++    HQG
Sbjct: 207 QQQSQAASQQSQPGMHPRQQQQAQQHQG 234


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 248 WLCASLCFFP*ARYWSHV 195
           W+C+S   FP   +W  V
Sbjct: 171 WICSSAISFPAIVWWRAV 188


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 381 LQLVLVPLPHCESSFPPTTPGS 446
           ++ + VP+P    +FPP   GS
Sbjct: 109 IEQIPVPVPVYYGNFPPRPMGS 130


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 381 LQLVLVPLPHCESSFPPTTPGS 446
           ++ + VP+P    +FPP   GS
Sbjct: 109 IEQIPVPVPVYYGNFPPRPMGS 130


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 381 LQLVLVPLPHCESSFPPTTPGS 446
           ++ + VP+P    +FPP   GS
Sbjct: 109 IEQIPVPVPVYYGNFPPRPMGS 130


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 381 LQLVLVPLPHCESSFPPTTPGS 446
           ++ + VP+P    +FPP   GS
Sbjct: 109 IEQIPVPVPVYYGNFPPRPMGS 130


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 381 LQLVLVPLPHCESSFPPTTPGS 446
           ++ + VP+P    +FPP   GS
Sbjct: 109 IEQIPVPVPVYYGNFPPRPMGS 130


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 381 LQLVLVPLPHCESSFPPTTPGS 446
           ++ + VP+P    +FPP   GS
Sbjct: 109 IEQIPVPVPVYYGNFPPRPMGS 130


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 215 LMGKNTMMRKAIKDHLDNNPALEKLLPH 298
           L GK+  + K IK  ++N    ++ LP+
Sbjct: 110 LGGKHKFISKKIKKTMENKDITKRPLPN 137


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,559
Number of Sequences: 438
Number of extensions: 3176
Number of successful extensions: 19
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)