Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2210
(480 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc... 200 9e-53
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 27 1.1
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 1.9
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 25 5.9
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 25 5.9
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 25 5.9
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 25 7.8
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 25 7.8
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 25 7.8
SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pom... 25 7.8
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 25 7.8
>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 192
Score = 200 bits (488), Expect = 9e-53
Identities = 92/143 (64%), Positives = 115/143 (80%)
Frame = +2
Query: 50 MPLQMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKAD 229
M LQ+ KPAP FK TAVVNG F++I L+DYKGK+V L FYPLDFTFVCPTEI+AFSE A
Sbjct: 1 MSLQIGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAAS 60
Query: 230 EFRKIGCEVLGAFTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRIFRDYRVLDQETG 409
+F + +V+ TDS ++HLA+INTPRK+GGLG +NIPL++D SH++ RDY VL ++ G
Sbjct: 61 KFAERNAQVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAG 120
Query: 410 IPFRGLFIIDDKQNLRQITINDL 478
+ FRGLF+ID K LRQITINDL
Sbjct: 121 VAFRGLFLIDPKGVLRQITINDL 143
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 27.5 bits (58), Expect = 1.1
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +2
Query: 41 STRMPLQMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTE 202
ST + L + P P F+ + +G+F S + K K V L YP TF TE
Sbjct: 262 STLLKLHQS-PEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTE 314
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.6 bits (56), Expect = 1.9
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = -1
Query: 261 PSTSQPILRNSSAFSENAMISVGHTNVKSKG*KNSTTYFPL*SDREMSLNSPLTTAVALN 82
P TS +L +S+ + + +++ T + S N T P+ S ++ ++P+T++ ALN
Sbjct: 1247 PITSSSVLNSSTPITSSTVVN-SSTPITSSTALN--TSIPITSSSVLNSSTPITSSTALN 1303
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 25.0 bits (52), Expect = 5.9
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -3
Query: 271 GEGPEHLAADLAELVRFLRERDDLRRAHEREVQRIEEQHNIFPLVV 134
G+GPEH +A + ++ E D E ++QR + NI + V
Sbjct: 777 GQGPEHSSARMERYLQLCNE-DPREFPSEEKLQRQHQDCNIQAIYV 821
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 25.0 bits (52), Expect = 5.9
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +1
Query: 313 QAGRTRPHEHSSDKRQVAPHFPRLPSAGPGDRHSLSRTLYHRRQAEPQADHDQRP 477
+A R+ H H + + H R S G HS +L+ QA+P A ++P
Sbjct: 448 KAVRSARHRHYASLDEQGLHSLRNLSKTSGMNHSADFSLHEFGQADPFAYEIEKP 502
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 25.0 bits (52), Expect = 5.9
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 320 GGLGPMNIPLISDKS 364
GGL PM+IP IS +S
Sbjct: 673 GGLAPMSIPAISKRS 687
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 24.6 bits (51), Expect = 7.8
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -3
Query: 463 DLPEVLLVVDDKESS--KGNAGLLVQHSVVAENAVRLVAYQRNVHGAESALLARR 305
++PEV LVVDD S K + + + A V VA R + + L RR
Sbjct: 146 EIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRR 200
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 24.6 bits (51), Expect = 7.8
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -3
Query: 463 DLPEVLLVVDDKESS--KGNAGLLVQHSVVAENAVRLVAYQRNVHGAESALLARR 305
++PEV LVVDD S K + + + A V VA R + + L RR
Sbjct: 146 EIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRR 200
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 24.6 bits (51), Expect = 7.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 267 SPTRTLRTSPGSTRRASRADS 329
SP R++ SPGST A+ DS
Sbjct: 188 SPVRSVAFSPGSTLLAAAGDS 208
>SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 336
Score = 24.6 bits (51), Expect = 7.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 208 DDLRRAHEREVQRIEEQHNIFPLVVRQRNVLEL 110
DD + AH EV R EEQ + ++++ N ++
Sbjct: 213 DDSKEAHSEEVFRSEEQIQLANSLLQKLNACKI 245
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 24.6 bits (51), Expect = 7.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 235 ELVRFLRERDDLRRAHEREVQRIEEQHNIFPLVVRQR 125
E+ FLR R ++ + + H++F LVV+QR
Sbjct: 207 EIDAFLRLAAKNIRTELSDISGVRKGHSVFSLVVQQR 243
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,772,976
Number of Sequences: 5004
Number of extensions: 33470
Number of successful extensions: 132
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -