Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2207
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    36   0.009
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    31   0.25 
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    30   0.33 
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun...    27   2.3  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    27   4.1  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    26   5.4  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    26   5.4  
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces...    26   7.1  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    25   9.4  
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch...    25   9.4  

>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 35.5 bits (78), Expect = 0.009
 Identities = 21/81 (25%), Positives = 37/81 (45%)
 Frame = +3

Query: 549 PNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETRTSQSDKSQGATTPKT 728
           P      N   E+P  KP +   + +P P+  TN+   + D++T +   D       P  
Sbjct: 203 PTQGASSNVTPESPPEKP-IPSFVLSPPPVSATNEANKLSDIQTSSPSQDIPAKHLEPLH 261

Query: 729 ISTALSNRHPAEDTTLDFSYD 791
           ++ +LS+   +ED+ L  S D
Sbjct: 262 LNRSLSSSPSSEDSDLSLSSD 282


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 16/72 (22%), Positives = 37/72 (51%)
 Frame = +3

Query: 504 LKQKFQPAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETR 683
           L +  + +K  + Q+ N       H+E  + K E+K E + P+ +++     + + +   
Sbjct: 181 LAEHLENSKKTILQHDNKEEDKEIHSEENETKDEIKSEKKEPE-IKKQEGGSSTEKVGQP 239

Query: 684 TSQSDKSQGATT 719
           +S  DK++G+T+
Sbjct: 240 SSSDDKAKGSTS 251


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +1

Query: 7   QASGGFEVKIQI*KVSYHSACVCSCE--NVHGALESYK 114
           +++G  ++ IQI +  YH+A   SCE   V G  ESY+
Sbjct: 519 ESAGAKKLNIQIFETIYHAALEASCEIAQVEGTYESYE 556


>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
           Taf7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 537 VKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRT 647
           V+  PND     P    P P P++K++ R P   R T
Sbjct: 9   VQPPPNDSRSSTPATGPPPPIPKIKIKTREPKGPRLT 45


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1112

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 21/105 (20%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
 Frame = +3

Query: 486  RVSWRYLKQKFQPAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPL-----RRTN 650
            RV++ +  ++ +   N +  + N +++ +P +E  +   +   E +  D L     RR  
Sbjct: 1000 RVAYHFKSKRLE---NALSSFKNQISNQSPMSEEIQADADAFGESKGSDELQSRILRRKK 1056

Query: 651  QPLNVKDLETRTSQSDKSQGATTPKTISTALSNRHPAEDTTLDFS 785
               +    ++ +   D    + TPKT S+++S  +    T L  S
Sbjct: 1057 MMASKNSSDSDSDSEDNFLASLTPKTNSSSISIENLPRKTKLSTS 1101


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +3

Query: 588 PKPKPELKLEIRNPDPLRR-TNQPLNVKDLETRTSQSDKSQGATTPKTISTALSNRHPAE 764
           P   P   L + +P P      + +N+ ++E+  +    S  ++ P+T  T+++NR P++
Sbjct: 477 PSSNPN-NLLLNDPSPASTPVAKTINLNEIESVHNAESVSTLSSIPRTEQTSVANRIPSK 535

Query: 765 DTTL 776
              L
Sbjct: 536 TAAL 539


>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1205

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +3

Query: 588  PKPKPELKLEIRNPDPL---RRTNQPLNVKDLETRTSQSDKSQGATTPKTISTALSNRHP 758
            PK + +++  IR P      + TN+  N+K  +T +S+SDK             L+ ++P
Sbjct: 1098 PKMESQIEHAIRTPVSSFAKQTTNKHANLKQKKTHSSKSDKKSSRRRKNEKRRKLNEQNP 1157


>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 777 LRSYLQPDACY*ERCLSSLAWLRLDFYPTVRFWSLSPSR 661
           L S+L  +  Y  RC+    W+ +D  P  R W + P +
Sbjct: 50  LMSFLLHELIYFGRCIP---WMIIDAMPYFRRWKIQPKK 85


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = +3

Query: 594 PKPELKLEIRNPDPLRRTNQPLNVKDLETRTSQSDKSQGATTPKTISTALSNRHPAEDTT 773
           P P  K E+ +   LRR  +   + +L     + +     T  KT+   L+N    ED  
Sbjct: 800 PFPTYKSELDDETVLRRVKRMQTIIELARYVREQNNISLKTPLKTLIVILTNEEYLEDAK 859

Query: 774 L 776
           L
Sbjct: 860 L 860


>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 136

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +3

Query: 579 AEAPKPKPELK-LEIRNPDPLRRTNQPLNVKDLETRTSQSDKSQGATTPKTISTALSNRH 755
           A+  + KP +K +   +  P R   +  N+K L T T+ S+ SQ +   KT+      ++
Sbjct: 63  AKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEEKY 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,055,089
Number of Sequences: 5004
Number of extensions: 59585
Number of successful extensions: 205
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)