Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2206
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    29   0.99 
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    27   3.0  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    26   7.0  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    25   9.2  

>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +2

Query: 605  KCHLTQCSLNIST-PPQL--PYPAYGNHIMQFSYPHVER*KGHLVLKVGKR 748
            KCHL  C + I+T  P+L   +     H++ F Y   E  +G ++ K+G R
Sbjct: 1197 KCHLNTCPVGIATQDPELRKKFEGQPEHVVNFFYYVAEELRG-IMAKLGFR 1246


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 530 VKTPRTLVSCDAKTHQCSKTK-GSYQIFLKNYV 435
           +KTP+ +  CD   H C  T+   Y++  K YV
Sbjct: 218 MKTPQQINDCDCGLHVCENTRILMYRLLQKPYV 250


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 303 HSLPDVKWLREPIDNYNVNAPPTLRY 226
           HSLP  +W +  I  + ++ PP   Y
Sbjct: 41  HSLPISEWYKSSISEWTLDYPPFFAY 66


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = -1

Query: 232 EI*VLRSQYSDNGSYPYLLVPTRADSQEVLRSVITPSSHL 113
           +I +L+S   DN S  + + PT++ +Q+  +S+I   S++
Sbjct: 344 QIPILQSLLEDNQSTAFFVFPTKSLAQDQKKSLIDILSYM 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,246,330
Number of Sequences: 5004
Number of extensions: 70121
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)