Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2206
         (781 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81038-12|CAB02758.2|  380|Caenorhabditis elegans Hypothetical p...    29   2.8  
AF016666-7|AAB66087.1|  196|Caenorhabditis elegans Hypothetical ...    28   8.6  

>Z81038-12|CAB02758.2|  380|Caenorhabditis elegans Hypothetical
           protein C25A1.3 protein.
          Length = 380

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = -3

Query: 614 NDISILTFTLMDLGREYADGNFGAVRLKVKTPRTLVSCDAKTHQCSKTKGSYQIFLKNYV 435
           N+I  + F + D  +E  +      R++ K P  LVSC    H     + S +IFLKN V
Sbjct: 106 NNIFTVQFIVADCTKENLED-----RIENKDPFDLVSCQFALHYSFVDEASARIFLKNAV 160


>AF016666-7|AAB66087.1|  196|Caenorhabditis elegans Hypothetical
           protein B0281.1 protein.
          Length = 196

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +2

Query: 545 HRNFHQHILFLSPLK*MSKLKCHLTQCSLNISTPPQLPYPAYGNHIMQFSYP 700
           H+++ + +L     +    L C LTQ  LNI +  ++    Y + +M    P
Sbjct: 145 HKDYTKELLISRAAELRRTLGCRLTQIKLNIQSYTEMTNKIYVSRLMNLQKP 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,916,400
Number of Sequences: 27780
Number of extensions: 393751
Number of successful extensions: 736
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)