Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2204
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    89   4e-20
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           89   4e-20
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           80   2e-17
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    71   1e-14
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    71   1e-14
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    27   0.19 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   5.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   7.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   7.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   7.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   7.0  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 89.0 bits (211), Expect = 4e-20
 Identities = 58/171 (33%), Positives = 83/171 (48%), Gaps = 2/171 (1%)
 Frame = +2

Query: 2   GNAGIKDIVQAIRWVKDNIHHFGGNAGNLTIFGESAGARAVSLLTASPLTKNLISKAIIQ 181
           GN G+KD   A+RWV +NI  FGGN   +T+ G SAG  +V     SPL+  L    I  
Sbjct: 175 GNMGLKDQSMALRWVSENIEWFGGNPKRITLIGLSAGGASVHYHYLSPLSAGLFQGGISI 234

Query: 182 SGNALSSRAFQRDPLQSAKALARSLGCEAEDVDEILEFLIATPAKDLVEADEKLNSLQKV 361
           SG AL+      + L+ AK +   +GC   +V E++  L   PA+ +VE    L +  + 
Sbjct: 235 SGTALNCWTQTENSLEKAKQVGAFMGCPTRNVKEMIRCLRYRPARAIVET---LANFMRF 291

Query: 362 LETSNNLFGLVIEKEFPGVEAV--ISEPFINILTSGRTANIPILVGTTSLE 508
                  FG V EK      ++  I    I I+ SG   ++P + G TS E
Sbjct: 292 YYNPFTPFGPVTEKVNNDSNSLPFIDRTPIEIINSGDVQDVPWVTGVTSEE 342


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 89.0 bits (211), Expect = 4e-20
 Identities = 58/171 (33%), Positives = 83/171 (48%), Gaps = 2/171 (1%)
 Frame = +2

Query: 2   GNAGIKDIVQAIRWVKDNIHHFGGNAGNLTIFGESAGARAVSLLTASPLTKNLISKAIIQ 181
           GN G+KD   A+RWV +NI  FGGN   +T+ G SAG  +V     SPL+  L    I  
Sbjct: 175 GNMGLKDQSMALRWVSENIEWFGGNPKRITLIGLSAGGASVHYHYLSPLSAGLFQGGISI 234

Query: 182 SGNALSSRAFQRDPLQSAKALARSLGCEAEDVDEILEFLIATPAKDLVEADEKLNSLQKV 361
           SG AL+      + L+ AK +   +GC   +V E++  L   PA+ +VE    L +  + 
Sbjct: 235 SGTALNCWTQTENSLEKAKQVGAFMGCPTRNVKEMIRCLRYRPARAIVET---LANFMRF 291

Query: 362 LETSNNLFGLVIEKEFPGVEAV--ISEPFINILTSGRTANIPILVGTTSLE 508
                  FG V EK      ++  I    I I+ SG   ++P + G TS E
Sbjct: 292 YYNPFTPFGPVTEKVNNDSNSLPFIDRTPIEIINSGDVQDVPWVTGVTSEE 342


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 80.2 bits (189), Expect = 2e-17
 Identities = 42/109 (38%), Positives = 59/109 (54%)
 Frame = +2

Query: 2   GNAGIKDIVQAIRWVKDNIHHFGGNAGNLTIFGESAGARAVSLLTASPLTKNLISKAIIQ 181
           GN G+KD   A+RWV +NI  FGGN   +T+ G SAG  +V     SPL+  L    I  
Sbjct: 46  GNMGLKDQSMALRWVSENIEWFGGNPKRITLIGLSAGGASVHYHYLSPLSAGLFQGGISI 105

Query: 182 SGNALSSRAFQRDPLQSAKALARSLGCEAEDVDEILEFLIATPAKDLVE 328
           SG AL+      + L+ AK +   +GC   +V E++  L   PA+ +VE
Sbjct: 106 SGTALNCWTQTENSLEKAKQVGAFMGCPTRNVKEMIRCLRYRPARAIVE 154


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 70.9 bits (166), Expect = 1e-14
 Identities = 39/96 (40%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
 Frame = +2

Query: 2   GNAGIKDIVQAIRWVKDNIHHFGGNAGNLTIFGESAGARAVSLLTASPLTKNLISKAIIQ 181
           GN G+ D   A+RW++DN   FGG+   +TIFGESAG  +VSL   SP+T+ L+ + I+Q
Sbjct: 219 GNMGLWDQALALRWLRDNAEAFGGDPELITIFGESAGGSSVSLHLISPVTRGLVRRGILQ 278

Query: 182 SG--NALSSRAFQRDPLQSAKALARSLGCEAEDVDE 283
           SG  NA  S        + A  L    GC +  ++E
Sbjct: 279 SGTLNAPWSYMSGEKANEVATILVDDCGCNSTMLNE 314


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 70.9 bits (166), Expect = 1e-14
 Identities = 39/96 (40%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
 Frame = +2

Query: 2   GNAGIKDIVQAIRWVKDNIHHFGGNAGNLTIFGESAGARAVSLLTASPLTKNLISKAIIQ 181
           GN G+ D   A+RW++DN   FGG+   +TIFGESAG  +VSL   SP+T+ L+ + I+Q
Sbjct: 219 GNMGLWDQALALRWLRDNAEAFGGDPELITIFGESAGGSSVSLHLISPVTRGLVRRGILQ 278

Query: 182 SG--NALSSRAFQRDPLQSAKALARSLGCEAEDVDE 283
           SG  NA  S        + A  L    GC +  ++E
Sbjct: 279 SGTLNAPWSYMSGEKANEVATILVDDCGCNSTMLNE 314


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 494  TTSLEYACERKSDDLQELIPADLNIDRNSEEALAIVEEIKKLYFQRE 634
            T  L Y  +     L E++ AD+N  +N  + L + +++ +LY   E
Sbjct: 1006 TPELIYEYQIHPKTLNEVLQADMNALKNFNQPLLVNDQLGQLYLDLE 1052


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -2

Query: 712 YRCVSKLINLSDKRWKYSGRLSTPVWFPLKIQFLY 608
           Y   S  ++++ K      +  T VW P   QFLY
Sbjct: 397 YERGSMTVSVTSKPSTMERQTQTEVWIPKWRQFLY 431


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +3

Query: 48  KIISITSVVMPVI*QYLV 101
           KI+  TS+V+P+I +YL+
Sbjct: 284 KILPPTSLVLPLIAKYLL 301


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 296 LIATPAKDLVEADEKLNSLQKVLETSNN 379
           L    AKDLV  ++  N      ET NN
Sbjct: 681 LFKDEAKDLVSVNKSWNKWNDWQETQNN 708


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 296 LIATPAKDLVEADEKLNSLQKVLETSNN 379
           L    AKDLV  ++  N      ET NN
Sbjct: 681 LFKDEAKDLVSVNKSWNKWNDWQETQNN 708


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 296 LIATPAKDLVEADEKLNSLQKVLETSNN 379
           L    AKDLV  ++  N      ET NN
Sbjct: 681 LFKDEAKDLVSVNKSWNKWNDWQETQNN 708


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,092
Number of Sequences: 438
Number of extensions: 4003
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)