Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2200
         (808 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0656 - 35330109-35331011,35331154-35331360,35331455-353316...    31   1.4  
11_06_0479 + 24076860-24077809,24078700-24079321                       30   1.9  
02_05_0591 - 30183105-30183869                                         29   4.4  
02_03_0064 + 14607975-14608925                                         28   7.6  
01_07_0264 - 42388455-42388565,42388656-42388688,42388792-423889...    28   7.6  

>03_06_0656 -
           35330109-35331011,35331154-35331360,35331455-35331632,
           35331726-35332221,35332889-35333033
          Length = 642

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +1

Query: 451 TKKPPQQTAGKPFGA-NANGGRRHVANHQHRGLSNGCVGVNQRHYAQ*NGK-FKNFVYS 621
           TKK  +   GK  G  N +GGR +  ++ +RG SN   G    +Y   N   ++N+ Y+
Sbjct: 42  TKKGAKDVKGKNNGQENGSGGRNYDYDYYNRGYSNNNGGYQNYNYNGNNSNGYQNYNYN 100


>11_06_0479 + 24076860-24077809,24078700-24079321
          Length = 523

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +1

Query: 418 GHWQQQQHVANTKKPPQQTAGKPFGANANGGRRHVANHQHRGLSNGCVGVNQRHYAQ*NG 597
           G W+++  V   +K        P G    G RR  + + H  L   C G     Y+  NG
Sbjct: 264 GRWEERAFVREGEKVTTVEDMMPLGYPYRGPRRGYSVYHHGSLYAHCRGAFVTRYSLANG 323

Query: 598 KFK 606
           K++
Sbjct: 324 KYQ 326


>02_05_0591 - 30183105-30183869
          Length = 254

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 168 SGSG-VGTPQRLSFHHEQVFGRK 233
           SGSG  GTPQ ++F H+  FG K
Sbjct: 232 SGSGGAGTPQTVNFEHQHPFGYK 254


>02_03_0064 + 14607975-14608925
          Length = 316

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +1

Query: 421 HWQQQQHVANTKKPPQQTAGKPFGANANGGRRHVANHQHRGLSNGCVG 564
           H QQQQH  + K    Q  G P    + G +R   + ++ G  +G  G
Sbjct: 25  HLQQQQHQLHLKTEDDQGGGTPGVFGSRGTKRDHDDDENSGNGHGSGG 72


>01_07_0264 -
           42388455-42388565,42388656-42388688,42388792-42388905,
           42389011-42389100,42389173-42389268,42389363-42389404,
           42389498-42389608,42392258-42392440,42392518-42392961
          Length = 407

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 222 ILAHDETTNVAEFQLRYRIRF 160
           +L+HDE   V E   RYRIRF
Sbjct: 126 LLSHDEMIEVKERHARYRIRF 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,014,665
Number of Sequences: 37544
Number of extensions: 360804
Number of successful extensions: 901
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)