Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2199
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    30   0.33 
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    26   5.5  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    26   7.2  
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    26   7.2  
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ...    25   9.5  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    25   9.5  

>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = +3

Query: 21  PVLEKLNVDPDVDVKYFASEAI 86
           P+LE+L  D D DV+YFA++A+
Sbjct: 564 PLLEQLTKDNDPDVQYFATQAL 585


>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 734 YKIFVFGHGLPNIQYITQAHLH 799
           YK+ V   G+PN+ Y  Q  LH
Sbjct: 59  YKLLVGNAGIPNVYYFGQEGLH 80


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 127 ILHKGPNIRTVLWSIIDSW 183
           I+HK P +   +WSII SW
Sbjct: 273 IVHKAPWLFQGVWSIIKSW 291


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 433 VLGDRFRSRRQTIVLMTLLKIGWKKNL 513
           VLGD  RS R     ++  K+GWK +L
Sbjct: 31  VLGDIARSPRMQYHAVSFAKLGWKVDL 57


>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 127 ILHKGPNIRTVLWSIIDSW 183
           ILHK P I   +W+II  W
Sbjct: 240 ILHKSPWIFRSVWNIIKGW 258


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 651 FVLHCWFFFLVK*CIFYGTTVSFTYT 574
           F L C++  L   C+ Y T V+ T T
Sbjct: 142 FFLECFYLNLYSICVLYSTFVAITKT 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,015,937
Number of Sequences: 5004
Number of extensions: 59571
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)