Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2198
         (555 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   1.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.4  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   4.1  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   4.1  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 5/18 (27%), Positives = 12/18 (66%)
 Frame = -1

Query: 174 HIIRILCTFFTYYFRFIF 121
           H++ ++C ++ YY   +F
Sbjct: 251 HLLLLVCIYYFYYMHLLF 268


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 15/54 (27%), Positives = 20/54 (37%)
 Frame = +1

Query: 118 WENEAEIIGEKGAKDSNDVSSKISTLNVNAMEFVPSFSKPSQASDSTDSPTSPQ 279
           WE   E   E+G K   D  +   T N  A    P     S       +P+SP+
Sbjct: 14  WEGGEEGSPEEGDKLEGDEDTGSMTPNSAASPAPPEEEAASPTPGDVPTPSSPR 67


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 397 PPPTTASVPPDVSPTADS 450
           P PT   +PP   PT  S
Sbjct: 207 PKPTVPKIPPAEFPTTSS 224


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 397 PPPTTASVPPDVSPTADS 450
           P PT   +PP   PT  S
Sbjct: 207 PKPTVPKIPPAEFPTTSS 224


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.313    0.128    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,867
Number of Sequences: 336
Number of extensions: 1895
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13725787
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)