Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2197
         (389 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S...    31   0.083
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    27   0.77 
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    24   7.2  
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces...    24   7.2  
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    24   9.5  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    24   9.5  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    24   9.5  
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|...    24   9.5  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    24   9.5  

>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
           Sop2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 377

 Score = 30.7 bits (66), Expect = 0.083
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 243 WGSRCNYTEILELIPQGGWRIYVVMFMGSSNHLTSGG 353
           WGSR  +  +    P GGW ++ V F  S N L   G
Sbjct: 189 WGSRLPFNTVCAEYPSGGW-VHAVGFSPSGNALAYAG 224


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 27.5 bits (58), Expect = 0.77
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 246 GSRCNYTEILELIPQGGWRIYVVMFMGSSNHLTSGGL 356
           G     +  L+ +P GGW    + +MG S+ +  GGL
Sbjct: 91  GGNHEASNYLDELPYGGWVAPNIYYMGRSSVINVGGL 127


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 370 GGRAHSPPDVKWLLEP 323
           GG  H P  V WLL P
Sbjct: 235 GGPLHDPNTVMWLLRP 250


>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 354

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 75 LVRRTHCRSEEPVELIRKV 19
          L RRTHC   E ++LI ++
Sbjct: 38 LERRTHCSQSELLQLIEQI 56


>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 90  GSRPNLVRRTHCRSEEPVELIRKVFI 13
           G+R   +R  +   E P +L+RKV++
Sbjct: 378 GTREGFLRDPYSGKEFPFQLLRKVYV 403


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 187 YHHPAYFRREAVMRFG 234
           Y HP  FR  AV+ FG
Sbjct: 249 YFHPHRFRSRAVLEFG 264


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 78  NLVRRTHCRSEEPVELIRK 22
           +LV+ TH R E+ +E IRK
Sbjct: 101 DLVKETHARLEQRLEEIRK 119


>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 255 CNYTEILELIPQGGW 299
           C   E++E IPQG W
Sbjct: 100 CRGCELVEFIPQGEW 114


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 55  AVSPTNEIRSTPSQPTTISLLTRIPCC 135
           ++SP NEI  TP  P  +  + +   C
Sbjct: 195 SMSPQNEINFTPENPAVMEKIRKRGVC 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,553,251
Number of Sequences: 5004
Number of extensions: 27565
Number of successful extensions: 57
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)