Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2197
         (389 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0576 - 30365903-30366328,30367262-30367640,30368215-303684...    31   0.43 
01_06_1141 + 34845834-34845931,34846110-34846198,34846535-348466...    26   9.2  

>01_06_0576 -
           30365903-30366328,30367262-30367640,30368215-30368459,
           30368819-30369039,30369786-30370074
          Length = 519

 Score = 30.7 bits (66), Expect = 0.43
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 197 GWWYLPVRTHK--RSYHQYVDCLQHGILVRRDIVV 99
           G+WYLP+  ++  R   Q +  +  GI+V+RD  V
Sbjct: 250 GYWYLPIENNRRIREIDQEIRTILRGIIVKRDKAV 284


>01_06_1141 +
           34845834-34845931,34846110-34846198,34846535-34846686,
           34847473-34847583,34847702-34847818,34847989-34848156,
           34848563-34848703
          Length = 291

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 252 GYPTLQTETHYCFTAEIGGVVVPTR-ADSQEVL 157
           GY  L   TH    AE+   V+ TR A +QE+L
Sbjct: 206 GYEHLSDPTHILIEAELPADVIDTRLAQAQEIL 238


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,713,477
Number of Sequences: 37544
Number of extensions: 212043
Number of successful extensions: 436
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)