Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2197
         (389 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132864-5|CAH60767.2|  281|Caenorhabditis elegans Hypothetical ...    32   0.12 
AC006685-3|AAK84570.1|  163|Caenorhabditis elegans Hypothetical ...    27   4.7  
Z81046-4|CAB02825.1|  278|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF040646-2|AAK31538.1|  275|Caenorhabditis elegans Hypothetical ...    27   6.2  

>AL132864-5|CAH60767.2|  281|Caenorhabditis elegans Hypothetical
           protein Y53H1A.5 protein.
          Length = 281

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +2

Query: 80  GRLPLSRRRYLF*-RGFHAVNNQHTGGRTSCES-ARVGTTTPPISA 211
           GRLPL R++Y+   R  HA+  + TGGR    + A   ++ P IS+
Sbjct: 173 GRLPLERQKYMHESRRQHALKRRRTGGRFDANAEAAAASSEPSISS 218


>AC006685-3|AAK84570.1|  163|Caenorhabditis elegans Hypothetical
           protein T13G4.1 protein.
          Length = 163

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 191 WYLPVRTHKRSYHQYVDCLQHGILVRRDIVVG 96
           WY     H     + VDC QHG LV  +  +G
Sbjct: 31  WYRNGHFHDDHQFKIVDCAQHGELVTYEAYLG 62


>Z81046-4|CAB02825.1|  278|Caenorhabditis elegans Hypothetical
           protein C37E2.5 protein.
          Length = 278

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 52  SAVSPTNEIRSTPSQPTTISLLTRIPCCKQS 144
           +AVSPT +  STPS  ++I+  + +P    S
Sbjct: 202 AAVSPTADNASTPSSSSSITATSSLPTTSSS 232


>AF040646-2|AAK31538.1|  275|Caenorhabditis elegans Hypothetical
           protein H17B01.3 protein.
          Length = 275

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 85  TPSQPTTISLLTRIPCCKQSTYWW 156
           T   PT+I LL +I   +Q+  WW
Sbjct: 90  TGGTPTSIQLLKKIHTAQQNIQWW 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,708,087
Number of Sequences: 27780
Number of extensions: 162872
Number of successful extensions: 347
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)