Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2196
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.97 
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.0  
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom...    27   3.9  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    26   5.2  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    26   5.2  
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce...    26   5.2  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -2

Query: 732  PLLPIPAGRLRLEKGARGTARRQPPRATPQNRLPT--KPHRAPPL 604
            P +PIP     + K + G     PP   P + +P+   P  APP+
Sbjct: 1041 PPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPV 1085


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = -2

Query: 765 EEQGEEEDRGPPLLPIPAGRLRLEKGARGTARRQPPRATPQNRLPTKPHRAPPLRLHE 592
           E   +E   G  LLP+    LR E   R T  +   + T    +PTKPH+A   ++++
Sbjct: 451 EPPNDEPSIGNELLPLFES-LRFEN--RKTTSKPKAKKTLVTSIPTKPHQASVEKVYD 505


>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -3

Query: 278 FTMVSRGIASVGPNSAPVVDSAQHYSFHFGACLKHRSSFSS 156
           F+ V R      PNS  + D   HY +HF   + H  S  S
Sbjct: 64  FSSVVRNALKANPNSVSIRDITTHY-YHFAEKMLHLISDDS 103


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 717 PAGRLRLEKGARGTARRQPPRATPQ-NRLPTKPHRAPPLRLHETHGTAQCAP 565
           P+  +RL + +    + QPP   PQ N  P     APP++  +T    Q AP
Sbjct: 190 PSNYVRLLEDS--AVKAQPPPPPPQQNYPPAASSSAPPMQYQQTAYPPQQAP 239


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/54 (27%), Positives = 21/54 (38%)
 Frame = -2

Query: 726 LPIPAGRLRLEKGARGTARRQPPRATPQNRLPTKPHRAPPLRLHETHGTAQCAP 565
           LP P     L  G+   +R   PR+    R P+  H + P  L    G  +  P
Sbjct: 330 LPAPTSSQSLRLGSLHRSRSPSPRSGRPRRSPSPSHLSIPSTLPPADGVPKPTP 383


>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -2

Query: 663 PPRATPQNRLPTKPHRAPPLRLHETHGTAQ 574
           PP+ T   RL T  H  PP+    T  T Q
Sbjct: 10  PPKRTINTRLSTPVHIPPPINSESTRITPQ 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,987,509
Number of Sequences: 5004
Number of extensions: 60510
Number of successful extensions: 190
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)