Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2196
         (772 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical ...    29   3.7  
AF000198-6|AAB53056.2|  526|Caenorhabditis elegans Calcium chann...    29   3.7  
AC084158-11|AAK68558.1|  555|Caenorhabditis elegans Hypothetical...    29   4.8  
U22831-9|AAN63388.1|  412|Caenorhabditis elegans Hypothetical pr...    28   6.4  
U22831-8|AAK20070.2|  545|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AC006644-3|AAF39838.2|  491|Caenorhabditis elegans Hypothetical ...    28   6.4  
U80452-4|AAB37860.1|  226|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical
           protein Y40B1A.5 protein.
          Length = 134

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 735 PPLLPIPAGRLRLEKGARGTAR-RQPPRATPQNRLPTKPHRAP 610
           PP LP    ++  E  A   A  R+PP + P + +P  PH  P
Sbjct: 30  PPALPRELTQISTETAAAVAALVRKPPPSLPPSTMPPGPHGMP 72


>AF000198-6|AAB53056.2|  526|Caenorhabditis elegans Calcium channel,
           beta subunit protein1 protein.
          Length = 526

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = -2

Query: 768 REEQGEEEDRGPPLLPIPAGRLRLEKGARGTARRQPPRATPQNRLPTKPHRAPPL 604
           R ++   E+RGP  L  PA   ++ +G +G A + PP+  PQ  + +      P+
Sbjct: 393 RIKRNPMENRGPSTLFTPA---QMMQGFQGNAGQLPPQLQPQQSIASMSQMGGPM 444


>AC084158-11|AAK68558.1|  555|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.14 protein.
          Length = 555

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/48 (35%), Positives = 20/48 (41%)
 Frame = -2

Query: 735 PPLLPIPAGRLRLEKGARGTARRQPPRATPQNRLPTKPHRAPPLRLHE 592
           P + P P+           T   QPPR TPQ     KP   PP  +HE
Sbjct: 273 PTIPPQPSANSTRAPDIGKTLSTQPPRRTPQPH--PKPPPPPPPPIHE 318


>U22831-9|AAN63388.1|  412|Caenorhabditis elegans Hypothetical
           protein F47D12.9b protein.
          Length = 412

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 600 LHETHGTAQCAPKVQIFMKTVIEHY-VKICEF 508
           +HE+     C PK    +KT IEHY V  CEF
Sbjct: 8   IHESR-LLNCNPKPSFTIKTPIEHYDVSGCEF 38


>U22831-8|AAK20070.2|  545|Caenorhabditis elegans Hypothetical
           protein F47D12.9a protein.
          Length = 545

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 600 LHETHGTAQCAPKVQIFMKTVIEHY-VKICEF 508
           +HE+     C PK    +KT IEHY V  CEF
Sbjct: 141 IHESR-LLNCNPKPSFTIKTPIEHYDVSGCEF 171


>AC006644-3|AAF39838.2|  491|Caenorhabditis elegans Hypothetical
           protein F55A3.7 protein.
          Length = 491

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -3

Query: 713 PGDYALRKAREALHGVSHQELPRKTDYRLNPIEPHHSDSTKPTVPHSARRRF 558
           PG    + + +  H ++H    ++  +R + I+ HHSDST P+   S   RF
Sbjct: 289 PGSQVGKDSGQFPHPLAHYM--KEFTFRASNIKDHHSDSTAPSRNLSTAFRF 338


>U80452-4|AAB37860.1|  226|Caenorhabditis elegans Hypothetical
           protein C16C8.4 protein.
          Length = 226

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -2

Query: 567 PKVQIFMKTV-IEHYVKICEFKYYLSIKSEVLHQRHIPFHHPLL*TQLKYLITECS 403
           P+ QIF+K + + +  KI        IK+++ H+  IP H   L    K L   CS
Sbjct: 152 PEFQIFVKVLGVSYAFKIHREDTVFDIKNDIEHRHDIPQHSYWLSFSGKRLEDHCS 207


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,670,989
Number of Sequences: 27780
Number of extensions: 345061
Number of successful extensions: 1033
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)