Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2194
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    29   0.94 
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   1.2  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    25   8.8  
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ...    25   8.8  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    25   8.8  

>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +1

Query: 244 FEC--CNASFFKRCLKRVHKAVAVPITNTHE 330
           F+C  C   F ++CL++ +K +A+P   T E
Sbjct: 139 FQCILCEDWFHEKCLQKTNKGIAIPDAETFE 169


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 527 AHGPPSVKWLPKPIDIYNVNAATYLSK 447
           A  PPS+K    P+DI N++AA  L K
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLKK 250


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 173 YTRTRINQIPTLKMNRMKNLSRYSSSAV 256
           Y RT + Q+ TL +  +KN S +SSS V
Sbjct: 62  YQRT-LQQLNTLSIYELKNRSHFSSSPV 88


>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 24  E*NELRYHLLVINHLLVIRIVI 89
           E   +++H+LVI H ++ RI+I
Sbjct: 401 EIERMKHHVLVIGHRVITRIII 422


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 592 VVEFSLNSKHPQPTT*YYLYFYTNIIK 672
           ++   L +  PQPT+  YLYF T  IK
Sbjct: 88  ILSTQLRTPPPQPTSIRYLYFGTYRIK 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,360
Number of Sequences: 5004
Number of extensions: 55422
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)