Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2194
         (752 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0026 + 219663-220843,222201-222447,222574-224535                 29   4.0  
11_01_0026 + 193383-194566,195726-195972,196099-198063                 28   6.9  
05_01_0094 - 627259-628236,628609-628689                               28   6.9  

>12_01_0026 + 219663-220843,222201-222447,222574-224535
          Length = 1129

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 263  DALQHSKNTAINFSFYSF*ELVFDLFLSWCNDLIRNVYVE 144
            DAL HS + +INF  + F +L  D+   + N L +N+  E
Sbjct: 1008 DALLHSVDGSINFKPFDFDKLADDMLQEFSNILRKNLGAE 1047


>11_01_0026 + 193383-194566,195726-195972,196099-198063
          Length = 1131

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 263  DALQHSKNTAINFSFYSF*ELVFDLFLSWCNDLIRNV 153
            DAL HS + +INF  + F +L  D+   + N L +N+
Sbjct: 1009 DALLHSVDGSINFKPFDFDKLADDMLQEFSNILRKNL 1045


>05_01_0094 - 627259-628236,628609-628689
          Length = 352

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 340 PRAI*SSTFEDNNNKNHRRNFKSLYSFAKLQKHVVS 447
           P  + SS++ DNNN NH +  +  ++    Q H V+
Sbjct: 5   PAFLDSSSWNDNNNNNHNQQQQQQHAHGHHQHHQVA 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,976,154
Number of Sequences: 37544
Number of extensions: 305672
Number of successful extensions: 434
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)