Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2193
         (783 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68296-1|CAA92589.2|  520|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical p...    28   8.7  
AL132851-1|CAB60411.1|  403|Caenorhabditis elegans Hypothetical ...    28   8.7  

>Z68296-1|CAA92589.2|  520|Caenorhabditis elegans Hypothetical
           protein C46C2.2 protein.
          Length = 520

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
 Frame = +2

Query: 533 VNILFIYLYIYTHAYI--RSFLIFIVYP-----ISHALARVCRDDIESDC*HYISNTAAY 691
           V++L +  Y   H +   + F IF+ Y      I  A  +VC D  +S C  Y  N    
Sbjct: 11  VDVLILISYQMCHFFSIQQLFPIFLNYTPKTNCIQTAQGKVCYDVPKSKCLEYNENFPNL 70

Query: 692 CTRTAAHALNYTRTTKYH 745
           C      AL+   T K H
Sbjct: 71  CANLTGTALSDCHTEKSH 88


>Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical
           protein Y69H2.14 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
 Frame = -3

Query: 268 DNCKPQSPARRSFSGLPGPLGQ----GE--HADSFSVA 173
           ++C+  +PAR+   G PGP GQ    GE  H+D+ S A
Sbjct: 190 NDCQTCAPARQGAPGPPGPAGQPGQPGEPGHSDTSSTA 227


>AL132851-1|CAB60411.1|  403|Caenorhabditis elegans Hypothetical
           protein Y53H1B.1 protein.
          Length = 403

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/62 (27%), Positives = 25/62 (40%)
 Frame = -1

Query: 534 TYHTQYNTR**SFRRFPYGNLVTTFTSSK*SSLVNFPTTPTAVKPPRVGPKTSLNHSIGS 355
           TY+   N        F + + V+T+     S+ +N         PPR GP  S   S  S
Sbjct: 230 TYNKDNNVAYAQVNTFKFADKVSTYFQCAVSTCMNTEGMCDGKTPPRCGPAGSFRSSSSS 289

Query: 354 SD 349
           +D
Sbjct: 290 ND 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,768,929
Number of Sequences: 27780
Number of extensions: 353568
Number of successful extensions: 1049
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)