Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2192
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0727 + 6446283-6449300                                           29   2.6  
03_04_0161 + 17838466-17838551,17842379-17842445,17842537-178426...    29   4.5  
12_02_0760 - 22888636-22889407,22889503-22889769,22890001-228903...    28   6.0  
12_01_0736 + 6582371-6585370                                           28   7.9  
12_01_0718 + 6339982-6342981                                           28   7.9  

>12_01_0727 + 6446283-6449300
          Length = 1005

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 324 PPLDGASMPYCLLSSMFCRSRFATNLVFASINELIFPK-TNPSTAFL 187
           P L   SMPYC LS   CRS   ++L   S+ EL F + + P   FL
Sbjct: 231 PNLQVISMPYCSLSGPICRS--LSSLRSLSVIELHFNQLSGPVPEFL 275


>03_04_0161 +
           17838466-17838551,17842379-17842445,17842537-17842662,
           17842756-17842886,17843121-17843220,17843334-17843466,
           17843500-17843544,17843545-17843608,17843692-17844469,
           17844897-17845229,17845427-17845634,17845733-17845809,
           17846168-17846240,17846343-17846413,17846597-17846716,
           17846815-17846879,17846974-17847124
          Length = 875

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 98  DALQP-LQEVGDEQLREKRKLEGITQAKFGVKNAVLGFVFGKIN 226
           D L P L+E+  EQ++EK +LEG  Q   G  N +  F+F  ++
Sbjct: 190 DLLLPWLKELQQEQMKEK-ELEGRLQGIGGFSNCLFTFLFAGVS 232


>12_02_0760 -
           22888636-22889407,22889503-22889769,22890001-22890302,
           22890402-22890512,22890990-22891568,22892026-22892087,
           22892434-22892754,22893434-22893776
          Length = 918

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 384 PSSCSLGPMTCPTTPASEPRPPLDGASM 301
           P  C  G   C T P+SE  P  DGA +
Sbjct: 309 PRRCRTGRRRCRTDPSSESPPAKDGAGI 336


>12_01_0736 + 6582371-6585370
          Length = 999

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -1

Query: 324 PPLDGASMPYCLLSSMFCRS 265
           P L   SMPYC LS   CRS
Sbjct: 227 PKLQIISMPYCSLSGPICRS 246


>12_01_0718 + 6339982-6342981
          Length = 999

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -1

Query: 324 PPLDGASMPYCLLSSMFCRS 265
           P L   SMPYC LS   CRS
Sbjct: 227 PKLQIISMPYCSLSGPICRS 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,706,586
Number of Sequences: 37544
Number of extensions: 128403
Number of successful extensions: 577
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)