Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2187
(720 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81550-3|CAD44141.1| 548|Caenorhabditis elegans Hypothetical pr... 33 0.21
Z81550-2|CAB04478.2| 548|Caenorhabditis elegans Hypothetical pr... 33 0.21
U28929-5|AAA68348.2| 438|Caenorhabditis elegans Gaba/glycine re... 29 2.5
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 29 3.3
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 29 3.3
Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical pr... 28 5.8
AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin pr... 28 5.8
Z99283-3|CAB16538.1| 327|Caenorhabditis elegans Hypothetical pr... 28 7.7
U58742-5|AAB36859.3| 711|Caenorhabditis elegans Hypothetical pr... 28 7.7
>Z81550-3|CAD44141.1| 548|Caenorhabditis elegans Hypothetical
protein F55F3.2b protein.
Length = 548
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +3
Query: 495 QSVGTLLKCVTSIHYDSPDMYSANNDLPNNRFSPSLCQ*N 614
QS GT+L C+ ++ YD + +A+N LP +R S+ Q N
Sbjct: 266 QSFGTILTCLRNVTYDK--IVAADNSLPGHRMKWSIVQDN 303
>Z81550-2|CAB04478.2| 548|Caenorhabditis elegans Hypothetical
protein F55F3.2a protein.
Length = 548
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +3
Query: 495 QSVGTLLKCVTSIHYDSPDMYSANNDLPNNRFSPSLCQ*N 614
QS GT+L C+ ++ YD + +A+N LP +R S+ Q N
Sbjct: 266 QSFGTILTCLRNVTYDK--IVAADNSLPGHRMKWSIVQDN 303
>U28929-5|AAA68348.2| 438|Caenorhabditis elegans Gaba/glycine
receptor family (seegbr) protein 3 protein.
Length = 438
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 314 STTSQRFLRMYTFYIYNLED*TH*SAMLLWNYHLISNKTLTAQHGLGIT 460
S T RF R+Y +Y+ + T+ S + W I + L A+ LG++
Sbjct: 238 SQTFYRFKRLYGYYVLQMYLPTYLSVFISWIAFWIDTRALPARITLGVS 286
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +2
Query: 230 CPSIRLIFRLPYALTTHTAGEYTSYLR*STTSQRFLRMYTFYIY 361
C ++ Y LT H E+ YLR T Q+ L + Y+Y
Sbjct: 361 CDICYRVYPSRYELTKHDCKEFAEYLRQLTFKQQTLHLEAAYMY 404
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +2
Query: 230 CPSIRLIFRLPYALTTHTAGEYTSYLR*STTSQRFLRMYTFYIY 361
C ++ Y LT H E+ YLR T Q+ L + Y+Y
Sbjct: 361 CDICYRVYPSRYELTKHDCKEFAEYLRQLTFKQQTLHLEAAYMY 404
>Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical protein
F15G9.4b protein.
Length = 5198
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -1
Query: 99 WVESGWVLA-GQSYRGQSEDGEQLSVHVDSLTLK 1
WV G V+ G+ Y+G + + L++H DS+++K
Sbjct: 1583 WVVDGTVVEPGKKYKGATLSNDGLTLHFDSVSVK 1616
>Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical protein
F15G9.4a protein.
Length = 5175
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -1
Query: 99 WVESGWVLA-GQSYRGQSEDGEQLSVHVDSLTLK 1
WV G V+ G+ Y+G + + L++H DS+++K
Sbjct: 1583 WVVDGTVVEPGKKYKGATLSNDGLTLHFDSVSVK 1616
>Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical protein
F15G9.4b protein.
Length = 5198
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -1
Query: 99 WVESGWVLA-GQSYRGQSEDGEQLSVHVDSLTLK 1
WV G V+ G+ Y+G + + L++H DS+++K
Sbjct: 1583 WVVDGTVVEPGKKYKGATLSNDGLTLHFDSVSVK 1616
>Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical protein
F15G9.4a protein.
Length = 5175
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -1
Query: 99 WVESGWVLA-GQSYRGQSEDGEQLSVHVDSLTLK 1
WV G V+ G+ Y+G + + L++H DS+++K
Sbjct: 1583 WVVDGTVVEPGKKYKGATLSNDGLTLHFDSVSVK 1616
>AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin
precursor protein.
Length = 5198
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -1
Query: 99 WVESGWVLA-GQSYRGQSEDGEQLSVHVDSLTLK 1
WV G V+ G+ Y+G + + L++H DS+++K
Sbjct: 1583 WVVDGTVVEPGKKYKGATLSNDGLTLHFDSVSVK 1616
>Z99283-3|CAB16538.1| 327|Caenorhabditis elegans Hypothetical
protein Y70C5C.4 protein.
Length = 327
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +1
Query: 505 ALCLNA*PPFIMIVLICIPRIMTSQITDFLLVFVN 609
ALC+ PF+++++ C ++S + F ++F+N
Sbjct: 242 ALCVQVTVPFVVVLVPCFYLNVSSALEHFDMIFIN 276
>U58742-5|AAB36859.3| 711|Caenorhabditis elegans Hypothetical
protein F31A3.5 protein.
Length = 711
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/56 (28%), Positives = 22/56 (39%)
Frame = +1
Query: 97 PAICPNYPFCDVDALAKHTPQGMPIPEWVRNPAILPIARAASNSVPKYPADFPAAL 264
PA N F A A H P+ ++N A ++PK PAD A+
Sbjct: 72 PAAINNINFRPNPAKAAHERHSQPVTNMLQNMLTFNRQSAPGRALPKLPADLYTAI 127
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,200,470
Number of Sequences: 27780
Number of extensions: 429077
Number of successful extensions: 980
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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