Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2186
         (703 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2W6E6 Cluster: Putative uncharacterized protein; n=1; ...    36   1.3  
UniRef50_A7SY11 Cluster: Predicted protein; n=2; Nematostella ve...    33   5.1  
UniRef50_Q5FL25 Cluster: Amino acid permease; n=6; Lactobacillus...    33   6.8  

>UniRef50_Q2W6E6 Cluster: Putative uncharacterized protein; n=1;
           Magnetospirillum magneticum AMB-1|Rep: Putative
           uncharacterized protein - Magnetospirillum magneticum
           (strain AMB-1 / ATCC 700264)
          Length = 133

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +1

Query: 334 LTESFVASHGFDEND---AR*YSLVLAIRLQCGPNTLFRLPNVLV**FTKGHVLRHVLAY 504
           LTE+F A+HG    D   AR   +VLA++LQ    +L  LP+ LV  FT    +   L Y
Sbjct: 35  LTEAFTATHGLSGRDLVKARFGIIVLALKLQADEASLRALPSDLVEIFTAVEGINDALGY 94


>UniRef50_A7SY11 Cluster: Predicted protein; n=2; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 526

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +2

Query: 257 YHRIRNATH*EDPVTNSVGCVCGLIYSPSPSSRATGSTRTMPGNILWFWPFDSNVG 424
           +H +R A H    + N    VCGL +SP     A+G       N++  WP+ S VG
Sbjct: 311 HHDVRVANHKIGTLLNHSQEVCGLKWSPDGKLLASGGN----DNVVNIWPYPSTVG 362


>UniRef50_Q5FL25 Cluster: Amino acid permease; n=6;
           Lactobacillus|Rep: Amino acid permease - Lactobacillus
           acidophilus
          Length = 541

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
 Frame = +2

Query: 293 PVTNSVGCVCGLIYSP-SPSSRATGSTRTMPGNILWFWPFDSNVGQILYFVFPTFWSDDL 469
           PV  S   +C L  +P S      GST +  G  L  W   ++   + YF   T+W+  +
Sbjct: 42  PVITSWIIMCLLYVTPYSLMVGQLGSTFSNEGGGLSSWVRGTDGEFLGYFTAWTYWAASI 101

Query: 470 PKGMS*GMCLLIVLVWSTTGSK 535
           P  +     +++ L W+ TGSK
Sbjct: 102 PYAVDSANEIIVDLGWALTGSK 123


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 687,970,640
Number of Sequences: 1657284
Number of extensions: 14001395
Number of successful extensions: 31047
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31044
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)