Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2186
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    27   2.0  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    26   6.0  
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr...    26   6.0  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    26   6.0  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    25   7.9  

>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 79  CLPTKACSKDCQYFLLFFLPKLMVYRDHISVTGLVGELT-GLKPDGAANTN 228
           C  T   S  C+  ++FF  ++++YRD IS       L  G  P G +N N
Sbjct: 444 CKHTIFASNPCR--IIFFSQEVLIYRDDISGRFQRNSLKFGKTPQGTSNIN 492


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +2

Query: 323 GLIYSPSPSSRATGSTRTMPGNILWFWPFDSNVGQILYFVFPTFWSDDL 469
           G+  SPS  +  +  ++   G  +  +  D NVG+++  +   FW+ +L
Sbjct: 627 GISISPSAVTNNSDVSKYELGIAISGYALDKNVGKLVELINKAFWNTNL 675


>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 417 LESNGQNQRILPGIVLVEPVARDEGLGE*IKPQTQPTEFVTGS 289
           L+S+G N   L    ++E    DE   E + P+T+   F  G+
Sbjct: 480 LQSSGNNDIYLKAYSIIEKYFSDEDAVEDLAPETENGAFTFGN 522


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +3

Query: 429  YSISSSQRFGLMIYQRACLEACAC---LLYWSGLRLDPKQYVILP 554
            Y I+S  R   ++Y+R CL   A     LYWS  + DP    +LP
Sbjct: 1154 YDITSWYR-DKILYERECLANGALPGFRLYWSDEQNDPDLSAVLP 1197


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -2

Query: 519 DQTSTISKHMPQDMPFGKSSDQNVGKTK*SIWPTLESNGQNQRILP 382
           D  S++ +   +D PF KS     G    +    L  +G N  +LP
Sbjct: 242 DSGSSVKQQSTRDGPFSKSFPNGNGHASGNSGEGLAEHGMNTGVLP 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,877,187
Number of Sequences: 5004
Number of extensions: 60369
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)