Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2186
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0603 - 19890664-19890823,19891104-19891329,19891498-198916...    29   3.6  
03_05_0107 - 20883353-20883627,20883739-20883801,20884608-208847...    29   4.7  
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347...    28   6.2  
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541...    28   6.2  
01_06_1731 + 39516897-39517632,39517744-39517912,39517985-395184...    28   8.3  

>07_03_0603 -
           19890664-19890823,19891104-19891329,19891498-19891636,
           19891849-19891942,19892291-19892311,19892506-19892941,
           19893133-19893280,19893369-19893476,19893543-19893659,
           19893960-19894016,19894488-19894553,19895140-19895328,
           19895410-19895523,19895684-19895766,19895857-19896322,
           19896832-19897476
          Length = 1022

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 508 TGLVYDWIQSNMSFCHNVVGITVVEIFPCTK 600
           TGL+YDWIQ  +S C         E+F C K
Sbjct: 532 TGLLYDWIQETLSDCRK-------ELFSCHK 555


>03_05_0107 -
           20883353-20883627,20883739-20883801,20884608-20884725,
           20885012-20885023
          Length = 155

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = -2

Query: 168 ADMVSVDHQLR*EKKKKILAIFRAGLCRETSCFENHTDRRTKY*VGFKLEV 16
           +D ++   QL+ E+   + A+FRA L  E + FE H  R T+   GF+ ++
Sbjct: 73  SDYITKVKQLQ-EEAAALKAVFRAYLVGEMNIFECHIGRLTRCRRGFRTQM 122


>03_06_0466 -
           34134138-34134278,34134355-34134481,34134558-34134713,
           34135831-34135835
          Length = 142

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 460 RPKRWEDEIEYLAHIGVEWPKP 395
           R +RW D+    +H+G EW KP
Sbjct: 18  RNQRWADKAYKKSHLGNEWKKP 39


>01_06_1253 -
           35753546-35753686,35753759-35753885,35753970-35754125,
           35754761-35754853,35757132-35757265,35757339-35757465,
           35757550-35757705,35758321-35758325
          Length = 312

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 460 RPKRWEDEIEYLAHIGVEWPKP 395
           R +RW D+    +H+G EW KP
Sbjct: 18  RNQRWADKAYKKSHLGNEWKKP 39



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 460 RPKRWEDEIEYLAHIGVEWPKP 395
           R +RW D+    +H+G EW KP
Sbjct: 188 RNQRWADKAYKKSHLGNEWKKP 209


>01_06_1731 +
           39516897-39517632,39517744-39517912,39517985-39518488,
           39518619-39518747,39519849-39519990,39520082-39520453
          Length = 683

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 314 CVCGLIYSPSPSSRATGSTRTMPGNILWFWPFDSNVGQIL 433
           C  G +Y+ + ++ A+  T   P    W WP D N G +L
Sbjct: 164 CRLGQLYAAAAAAAASSPTWPPPA---WDWPHDDNRGLVL 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,352,147
Number of Sequences: 37544
Number of extensions: 381485
Number of successful extensions: 830
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)