Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2186
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81078-1|CAB03075.3|  441|Caenorhabditis elegans Hypothetical pr...    24   3.0  
Z72518-3|CAB63415.2|  704|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z49131-7|CAA88980.3|  704|Caenorhabditis elegans Hypothetical pr...    29   4.3  

>Z81078-1|CAB03075.3|  441|Caenorhabditis elegans Hypothetical
           protein F36H2.2 protein.
          Length = 441

 Score = 23.8 bits (49), Expect(2) = 3.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 257 YHRIRNATH*EDPVTNS 307
           Y+++RN T+ EDPV  +
Sbjct: 31  YYKLRNVTNDEDPVNTT 47



 Score = 23.8 bits (49), Expect(2) = 3.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 296 VTNSVGCVCGLIYSPSPSSRATGSTRTMPGNIL 394
           V  S+ CV G I +   +   + STR + G+IL
Sbjct: 74  VYGSIACVLGSILNVFATKSLSNSTRMIWGHIL 106


>Z72518-3|CAB63415.2|  704|Caenorhabditis elegans Hypothetical
           protein ZC373.1 protein.
          Length = 704

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 414 ESNGQNQRILPGIVLVEPVARDEGLG 337
           E  G+  +++PG+ L+EP + + G+G
Sbjct: 433 EKTGKPGKLVPGVTLIEPTSGNTGIG 458


>Z49131-7|CAA88980.3|  704|Caenorhabditis elegans Hypothetical
           protein ZC373.1 protein.
          Length = 704

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 414 ESNGQNQRILPGIVLVEPVARDEGLG 337
           E  G+  +++PG+ L+EP + + G+G
Sbjct: 433 EKTGKPGKLVPGVTLIEPTSGNTGIG 458


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,908,227
Number of Sequences: 27780
Number of extensions: 339549
Number of successful extensions: 769
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)