Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2186
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.53 
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           23   2.8  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           21   8.6  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   8.6  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 534 KQYVILPQCCWH 569
           K+YV   QCCWH
Sbjct: 597 KKYVAGEQCCWH 608


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -2

Query: 132 EKKKKILAIFRAGLCRETSCFENHTDRRT 46
           E+ + +L +F   + R+   +  HT R+T
Sbjct: 53  EETRGVLKVFLENVIRDAVTYTEHTKRKT 81


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 402 GHSTPMWAKYSISSSQRFGLMIYQRACL 485
           G  TPM AKY + S   F  + Y+   L
Sbjct: 7   GSGTPMGAKYLMDSDVIFVTINYRLGIL 34


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -3

Query: 128 KRRKYWQSLEQAFVGRQAVLKTTPT 54
           + R+  QSL +AF   + ++ T P+
Sbjct: 261 RERQRTQSLNEAFAALRKIIPTLPS 285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,199
Number of Sequences: 438
Number of extensions: 4527
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)