Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2185
         (431 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000ECD46A Cluster: Tetratricopeptide repeat protein...    33   1.9  
UniRef50_Q8H931 Cluster: Putative UDP-glucose 4-epimerase; n=5; ...    33   3.4  
UniRef50_Q88JJ4 Cluster: Putative uncharacterized protein; n=4; ...    32   5.9  
UniRef50_A1SEL5 Cluster: FAD linked oxidase domain protein; n=1;...    31   7.8  
UniRef50_A2FA43 Cluster: Putative uncharacterized protein; n=1; ...    31   7.8  

>UniRef50_UPI0000ECD46A Cluster: Tetratricopeptide repeat protein 3
           (TPR repeat protein 3) (TPR repeat protein D) (RING
           finger protein 105).; n=2; Gallus gallus|Rep:
           Tetratricopeptide repeat protein 3 (TPR repeat protein
           3) (TPR repeat protein D) (RING finger protein 105). -
           Gallus gallus
          Length = 1876

 Score = 33.5 bits (73), Expect = 1.9
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = -2

Query: 310 NYGDQNRTSMSHEMRYAPDC-ACHTKCVIAGDAGLLRR---QSATKPR 179
           NY D+N      E+ + PDC    +K VI   +GL++R   Q  TKP+
Sbjct: 641 NYSDKNDKDFLQELCFTPDCRGLISKIVIFSSSGLVKREFEQKITKPK 688


>UniRef50_Q8H931 Cluster: Putative UDP-glucose 4-epimerase; n=5;
           Oryza sativa|Rep: Putative UDP-glucose 4-epimerase -
           Oryza sativa subsp. japonica (Rice)
          Length = 408

 Score = 32.7 bits (71), Expect = 3.4
 Identities = 12/30 (40%), Positives = 22/30 (73%)
 Frame = +2

Query: 2   RSDARLEFTGYKKLNETIREIVLYYDNTIH 91
           R DA + F G K + E++++ +LYYDN+++
Sbjct: 87  RFDAVVHFAGLKAVGESVQKPLLYYDNSVN 116


>UniRef50_Q88JJ4 Cluster: Putative uncharacterized protein; n=4;
           Pseudomonas putida|Rep: Putative uncharacterized protein
           - Pseudomonas putida (strain KT2440)
          Length = 77

 Score = 31.9 bits (69), Expect = 5.9
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -2

Query: 328 IGPGYENYGDQN--RTSMSHEMRYAPD--CACHTKCVIAGDAGL 209
           +G GY+ Y  Q+  R S++   R   +  CAC  +C  AGD GL
Sbjct: 30  LGEGYDLYDTQDKMRLSLNFSTRAQAEFECACRNRCGDAGDTGL 73


>UniRef50_A1SEL5 Cluster: FAD linked oxidase domain protein; n=1;
           Nocardioides sp. JS614|Rep: FAD linked oxidase domain
           protein - Nocardioides sp. (strain BAA-499 / JS614)
          Length = 906

 Score = 31.5 bits (68), Expect = 7.8
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 340 RFTYIGPGYENYGDQNRTSMSHEMRYAPDCACHTKCVIAGDAG 212
           R   + PG   + D  R +  + +R+ PD + HT+C I G  G
Sbjct: 104 RTAVVQPGVV-HADLQRAAAPYGLRFGPDPSTHTRCTIGGMIG 145


>UniRef50_A2FA43 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 416

 Score = 31.5 bits (68), Expect = 7.8
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 209 QPGVTCDNAFRVTCAIRRITHFV*HAST-ILVPIIFIPRAYICKSIL 346
           QPG+   N   V CAI  +  F  H    ++ P++FIP  Y  KSI+
Sbjct: 148 QPGIVIANYTHV-CAIGNVFSFYGHFFVDVVAPLMFIPEEYRNKSII 193


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 420,073,752
Number of Sequences: 1657284
Number of extensions: 7681534
Number of successful extensions: 16942
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16931
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21075479950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)