Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2185
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    26   2.2  
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M...    26   2.8  
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    26   2.8  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   5.0  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    24   8.7  
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    24   8.7  

>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 1   PLRRTTGVYWI*KIKRNNTRNSSILRQHDTLQIINKLTRHKTND 132
           PLR T+  Y++    +NN  N+S L Q + L+ + +    K +D
Sbjct: 266 PLRETSNPYFLRDFLKNNA-NTSTLGQSEQLRYLEEALSLKLSD 308


>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 140 IC*SFVLCLVNLLIICSVSCCRNIELFLVLFRLIFYIQ 27
           +C  F   L+ +L ICS+ C   +  FLV F L   I+
Sbjct: 1   MCPLFKTYLLYILKICSIPCLAYVVNFLVCFVLFTNIK 38


>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 234 ALSQVTPGCCAGSPPQSLVLIARFSHYC 151
           A + +T  C   SPP +LV+     H+C
Sbjct: 270 AATDLTLNCLKSSPPNALVIALCCHHHC 297


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +1

Query: 49  NNTRNSSILRQHDTLQIINKLTRHKTND*QIYENTIMRETRDQYEALW 192
           N+ R S  L   D   I+ KL+  K ND  I+ + I  +  D    LW
Sbjct: 525 NSERISHTLELQD---ILVKLSTPKNNDVFIFSSKITNKLNDDQSKLW 569


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 320 RAYICKSILKE*TSKKKVCVSAPTHHWSLLDIKKKKK 430
           + Y C+  LKE T+  +  VS      +LLD +++ K
Sbjct: 820 KIYHCEQSLKEKTNSLETLVSEKKELKNLLDAERRSK 856


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 71  YYDNTIHYRLLTN 109
           YYDNTI +R++ N
Sbjct: 490 YYDNTIFHRIIKN 502


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,786,032
Number of Sequences: 5004
Number of extensions: 33724
Number of successful extensions: 69
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)