Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2185
         (431 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0471 - 17563245-17563488,17563564-17563655,17563941-175640...    32   0.17 
05_07_0344 + 29411767-29411961,29412692-29412741,29413295-294134...    30   0.70 
09_02_0435 - 9384225-9384412,9385084-9385133,9385209-9385274,938...    30   0.92 
03_06_0444 - 33979319-33980044                                         29   2.1  
12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311     28   2.8  
11_01_0167 - 1360166-1360369,1360747-1360823,1360911-1361534,136...    27   4.9  
09_06_0023 - 20299435-20299528,20299666-20299757,20299873-202999...    27   4.9  

>08_02_0471 -
           17563245-17563488,17563564-17563655,17563941-17564023,
           17564418-17564499,17565234-17565461,17565553-17565654,
           17565818-17565953,17566080-17566129,17566465-17566572,
           17568702-17568911
          Length = 444

 Score = 32.3 bits (70), Expect = 0.17
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +2

Query: 2   RSDARLEFTGYKKLNETIREIVLYYDNTIH 91
           R DA + F G K + E++++ +LYYDN ++
Sbjct: 123 RFDAVVHFAGLKAVGESVQKPLLYYDNNVN 152


>05_07_0344 +
           29411767-29411961,29412692-29412741,29413295-29413430,
           29413931-29414032,29414153-29414380,29414460-29414544,
           29414648-29414730,29414854-29414945,29415048-29415141
          Length = 354

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 2   RSDARLEFTGYKKLNETIREIVLYYDNTI 88
           R +A + F G K + E++++ +LYYDN +
Sbjct: 82  RFEAVIHFAGLKAVGESVQKPLLYYDNNL 110


>09_02_0435 -
           9384225-9384412,9385084-9385133,9385209-9385274,
           9385360-9385451,9385893-9385975,9386181-9386259,
           9386888-9387115,9387196-9387297,9387719-9387854,
           9387984-9388033,9389391-9389618
          Length = 433

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 2   RSDARLEFTGYKKLNETIREIVLYYDNTI 88
           R DA + F G K + E++++ +LYYD+ +
Sbjct: 93  RFDAVVHFAGLKAVGESVQKPLLYYDHNV 121


>03_06_0444 - 33979319-33980044
          Length = 241

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 24/81 (29%), Positives = 36/81 (44%)
 Frame = +2

Query: 188 CGGLPAQQPGVTCDNAFRVTCAIRRITHFV*HASTILVPIIFIPRAYICKSILKE*TSKK 367
           C  LP + P  T         A+R IT  +  A   L+P +       C   +KE  S  
Sbjct: 142 CYSLPPELPKPTISPP---EAAVRPITLPIGTAKPTLLPRVK-EEGESCGGRVKEEASSC 197

Query: 368 KVCVSAPTHHWSLLDIKKKKK 430
           +V V AP   W+++  K+KK+
Sbjct: 198 EVQVLAPEPMWTMISGKRKKR 218


>12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311
          Length = 901

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -3

Query: 309 IMGTKIV-LACHTKCVMRLIAHVTRNALSQVTPGCCAGSPPQSLVLIARFSHYCIFI 142
           ++G K++ L C++ C+ RL+ H           GCC G   + + L+    H  I++
Sbjct: 729 VIGEKLMDLLCYSPCLQRLVIH-----------GCCIGLLSKQMTLLVNLRHLEIWV 774


>11_01_0167 -
           1360166-1360369,1360747-1360823,1360911-1361534,
           1361621-1361825
          Length = 369

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/54 (24%), Positives = 22/54 (40%)
 Frame = -3

Query: 354 YSFRIDLHI*ARGMKIMGTKIVLACHTKCVMRLIAHVTRNALSQVTPGCCAGSP 193
           Y+ R+   + A   ++ G  +V     K +M +I H  R    +    CC   P
Sbjct: 237 YNARVAARLAALRPRLAGADVVFCDIYKGIMDIITHPARYGFDETRKACCGLGP 290


>09_06_0023 -
           20299435-20299528,20299666-20299757,20299873-20299955,
           20300066-20300147,20300235-20300462,20300646-20300747,
           20300834-20300969,20301105-20301514
          Length = 408

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 2   RSDARLEFTGYKKLNETIREIVLYYDNTI 88
           R DA + F G K + E++    +YY+N +
Sbjct: 137 RYDAVIHFAGLKAVGESVAHPQMYYENNV 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,924,183
Number of Sequences: 37544
Number of extensions: 200523
Number of successful extensions: 438
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)