Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2183
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    27   1.7  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    26   3.9  
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    25   6.8  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    25   9.0  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    25   9.0  

>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 439 SSRGSNRRIANTALARAVLRRIYHRIXSATH*EDPARNSVGC 314
           SS G + R++  A A +   R +HRI      ED   +  GC
Sbjct: 177 SSNGVSARLSGYAFANSKRNRDFHRIFKVLPPEDHLIDDYGC 218


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +1

Query: 232 TTQ*ARSPSSSNPSLATKGSTSELTH--RHSPLSFSPDLL 345
           TT   R  SS+NP   T   +  L H  RH P   +P L+
Sbjct: 261 TTTWTRPASSTNPVHNTSSDSQRLNHQNRHLPDDSNPSLM 300


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 230 GSSRPLAGAWSGPQGNPSARTCGSLPNEA 144
           GSS PL   WSG     S+R     P+++
Sbjct: 60  GSSAPLYPKWSGALSLASSRAASPAPSDS 88


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +1

Query: 121 SIQQRITPASLGREPHVRAEGFP*GPLHAPARGRDDPTTQ*ARSPSSSNPSLATKGST 294
           ++ +++  A  G EPHV           +P   +D        S +SSNPSL + GS+
Sbjct: 46  NLDEKLMSAFPGLEPHVFQHS------QSPLSHKDASLLATMPSVASSNPSLISSGSS 97


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = +1

Query: 214 RGRDDPTTQ*ARSPSSSNPSLATKGSTSELTHRHSPLSFSPDLL 345
           RG      Q     SSS+ S + K STS+L    SP S  P  L
Sbjct: 12  RGNRSKRHQNLSDASSSSGSFSKKSSTSQLVRTGSP-SVEPTAL 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,641,818
Number of Sequences: 5004
Number of extensions: 30215
Number of successful extensions: 64
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)