Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2183
(522 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0075 + 3916373-3916400,3916760-3916858,3916943-3917116,391... 30 1.3
06_01_0489 + 3473669-3473671,3473830-3474030,3474740-3474955 29 1.7
09_04_0107 - 14640097-14640348,14640472-14640701,14640805-146412... 29 2.3
12_01_0362 - 2746626-2747726,2748358-2748982,2749086-2749156 29 3.0
04_03_0973 + 21359391-21359885,21359984-21360169,21361054-21361344 29 3.0
05_05_0062 + 22039410-22039985,22041467-22041555,22041638-220417... 28 4.0
06_01_0491 + 3506425-3506427,3506610-3506810,3507517-3507732 28 5.2
04_04_1647 + 35032328-35033803 28 5.2
05_03_0258 - 11153709-11156090 25 7.5
05_03_0192 - 9525945-9526210,9526305-9526539 27 9.1
03_01_0453 - 3471656-3471819,3472416-3472580,3473062-3473145,347... 27 9.1
>09_02_0075 +
3916373-3916400,3916760-3916858,3916943-3917116,
3917207-3917312,3917671-3917809,3918457-3918534,
3918863-3918928,3919213-3919298,3919939-3920038,
3920245-3920355,3920457-3920498,3920671-3920757,
3921013-3921102
Length = 401
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -2
Query: 263 DEDGDRAHCVVGSSRPLAGAWSGPQGNPSARTCGSLPNEAGVMR 132
D G R CVVG +R G + G + SA GS+ EA + R
Sbjct: 4 DNIGSRDVCVVGVARTPMGGFLGALSSLSATKLGSIAIEAALKR 47
>06_01_0489 + 3473669-3473671,3473830-3474030,3474740-3474955
Length = 139
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 215 LAGAWSGPQGNPSARTCGSLPNEAGVMRCWMEYLAGLKM 99
LAG W G GNP+ T GS G+ + + LK+
Sbjct: 55 LAGPWGGGGGNPTTITLGSQEFVKGISGTFTNVVTNLKI 93
>09_04_0107 -
14640097-14640348,14640472-14640701,14640805-14641215,
14641481-14643831,14643927-14644093
Length = 1136
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 196 PLHAPARGRDDPTTQ*ARSPSSSNPSLATKGSTS 297
P + P R +Q R P++S+PS A++GS +
Sbjct: 290 PANEPDSARQSVASQLGRKPAASSPSAASRGSAA 323
>12_01_0362 - 2746626-2747726,2748358-2748982,2749086-2749156
Length = 598
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +3
Query: 162 ATCPGRGVSLRPAPRPRKGTRRPHDAMSPVT--VLVEPVACDEGLDERINPQTQP 320
+ PG V+ P RP G RR H +P+T V+ P C G R+ Q P
Sbjct: 11 SAAPGSPVAQLPRRRPGHGPRRRHYLKNPLTGEVVRLPGHCHCGDPARLRRQHPP 65
>04_03_0973 + 21359391-21359885,21359984-21360169,21361054-21361344
Length = 323
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -3
Query: 277 QATGSTRTVTGLIASWGRRVPLRGRGAGLRETPLPG 170
Q+ S+R V +A G +VPL G G+GL TP+ G
Sbjct: 233 QSRKSSRHVA--VAVVGDKVPLYGGGSGLSSTPVKG 266
>05_05_0062 +
22039410-22039985,22041467-22041555,22041638-22041770,
22041864-22042093,22042199-22042675,22042748-22042934,
22043536-22043574,22043624-22044052
Length = 719
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/53 (30%), Positives = 20/53 (37%)
Frame = -3
Query: 319 GCVCGLIRXXXXXSQATGSTRTVTGLIASWGRRVPLRGRGAGLRETPLPGHVA 161
GC C + Q+ T A +GR + G G PLPG VA
Sbjct: 623 GCECAMTGLSELSEQSESGTDHGHDAAAGFGRGEEYKPAGIGYPTRPLPGRVA 675
>06_01_0491 + 3506425-3506427,3506610-3506810,3507517-3507732
Length = 139
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 215 LAGAWSGPQGNPSARTCGSLPNEAGVMRCWMEYLAGLKM 99
LAG W G GNP+ T GS G+ + + L++
Sbjct: 55 LAGPWGGGGGNPTTITLGSQEFVKGISGTFTNVVTNLQI 93
>04_04_1647 + 35032328-35033803
Length = 491
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 123 HPAAHHPCLIRQGATCPGRGVSL-RPAPRPRKGTRRP 230
HP HHP L R A R L RP PR R+GT P
Sbjct: 40 HPH-HHP-LSRLAAASLARAAHLARPRPRSRQGTAPP 74
>05_03_0258 - 11153709-11156090
Length = 793
Score = 25.0 bits (52), Expect(2) = 7.5
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 195 PAPRPRKGTRRPHDAMSPVTVLVEPVACDEGLDERINPQTQPT 323
P P+P TRRPH +P + P A + L I+ Q P+
Sbjct: 57 PPPQP-PATRRPHPTPTPPHSFLSPAA--QSLVAAISSQPLPS 96
Score = 20.6 bits (41), Expect(2) = 7.5
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +3
Query: 330 LAGSSQWVALXIRW*ILRSTALARAVLAILRFEPRE 437
L+G +W +RW A A A+ ++R RE
Sbjct: 122 LSGHWEWALALLRWASDEGAADAAALEMVVRALGRE 157
>05_03_0192 - 9525945-9526210,9526305-9526539
Length = 166
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 377 SAKHCSC*GGVSNPTV*APRAHLHKLGYAEIASQGYQ 487
S + CSC GG + AP + +GY S YQ
Sbjct: 66 SCQGCSCSGGDQTASTTAPLSTATAIGYRSDTSSAYQ 102
>03_01_0453 -
3471656-3471819,3472416-3472580,3473062-3473145,
3473304-3473375,3473496-3473574,3473894-3473990,
3474064-3474116,3474257-3474386,3474464-3474498,
3476108-3476212,3476759-3476833,3477671-3477799,
3477918-3478097,3478737-3478820,3478943-3479059,
3479170-3479242,3479316-3479437,3479519-3479641,
3479917-3479989,3480218-3480396,3480699-3480837,
3481105-3481259,3481570-3481875
Length = 912
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 285 GLDERINPQTQPTEFLAGSSQW 350
G D++ +P PT+F AG + W
Sbjct: 491 GHDDKAHPPIHPTKFSAGETNW 512
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,133,406
Number of Sequences: 37544
Number of extensions: 264932
Number of successful extensions: 894
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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