Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2183
(522 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8067| Best HMM Match : TSP_1 (HMM E-Value=1.1e-22) 31 0.76
SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_51986| Best HMM Match : HLH (HMM E-Value=0.15) 29 2.3
SB_39600| Best HMM Match : Sushi (HMM E-Value=0) 29 2.3
SB_45885| Best HMM Match : efhand (HMM E-Value=5.9e-05) 28 5.4
SB_20050| Best HMM Match : RVT_1 (HMM E-Value=1.3e-07) 28 5.4
SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_31861| Best HMM Match : rve (HMM E-Value=3.6e-07) 27 9.4
SB_12097| Best HMM Match : Birna_VP5 (HMM E-Value=4.6) 27 9.4
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_8067| Best HMM Match : TSP_1 (HMM E-Value=1.1e-22)
Length = 869
Score = 30.7 bits (66), Expect = 0.76
Identities = 18/56 (32%), Positives = 23/56 (41%)
Frame = -2
Query: 275 SDGFDEDGDRAHCVVGSSRPLAGAWSGPQGNPSARTCGSLPNEAGVMRCWMEYLAG 108
+D F ED A P A +W + NP + TCG V+ C E AG
Sbjct: 538 ADSFCEDAKPASTQECEIAPCAASWYKTEWNPCSATCGKGSQSRSVV-CRREIFAG 592
>SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 30.7 bits (66), Expect = 0.76
Identities = 20/66 (30%), Positives = 28/66 (42%)
Frame = +3
Query: 123 HPAAHHPCLIRQGATCPGRGVSLRPAPRPRKGTRRPHDAMSPVTVLVEPVACDEGLDERI 302
HP H C R A+ P S P+P P +G R D+ + + V D D +
Sbjct: 42 HPTCPH-C--RAKASLPSPSPS--PSPSPSQGATRERDSFWEIEAWMPTVTTDIRYDYYL 96
Query: 303 NPQTQP 320
NP+ P
Sbjct: 97 NPEVPP 102
>SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)
Length = 2110
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 114 QILHPAAHHPCLIRQGATCPGRGVSLR 194
+ LHPA HP L + PGR LR
Sbjct: 1807 ETLHPAVTHPALTHAHVSTPGRSPKLR 1833
>SB_39600| Best HMM Match : Sushi (HMM E-Value=0)
Length = 1368
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -2
Query: 209 GAWSGPQGNPSARTCGSLPNEA-GVMR 132
G+WSG Q SA CG+L + A G+MR
Sbjct: 532 GSWSGTQPRCSAVDCGTLDSPANGIMR 558
>SB_45885| Best HMM Match : efhand (HMM E-Value=5.9e-05)
Length = 611
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/57 (24%), Positives = 24/57 (42%)
Frame = -2
Query: 311 LWVNSLVEPFVASDGFDEDGDRAHCVVGSSRPLAGAWSGPQGNPSARTCGSLPNEAG 141
L ++ +++P G D D H + ++ + G W G G S SL + G
Sbjct: 513 LGLHPVMKPTFDLHGLDHPKDLQHVSLPTTPEIGGLWKGDGGGSSVLCLDSLTTDPG 569
>SB_20050| Best HMM Match : RVT_1 (HMM E-Value=1.3e-07)
Length = 493
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +1
Query: 250 SPSSSNPSLA-TKGSTSELTHRHSP 321
SP +N +LA TKG TSE RH P
Sbjct: 9 SPQGTNHNLARTKGQTSEGNRRHHP 33
>SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1318
Score = 27.1 bits (57), Expect = 9.4
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = +1
Query: 115 RYSIQQRITPASLGREPHVRAEGFP*GPLHAPARGRDDPTTQ*ARSPS 258
RY Q+R PA REP V G P PA+ R +P Q R P+
Sbjct: 657 RYPAQERRAPAQDRREPAVDKRG-PAIDRRGPAQDRGEP-AQDRRQPA 702
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 27.1 bits (57), Expect = 9.4
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +3
Query: 201 PRPRKGTR-RPHDAMSPVTVL----VEPVACDEGLDERINPQTQPTEF 329
PRPRK TR R + A VT + P+A D R+ P P EF
Sbjct: 2331 PRPRKITRFRHYCAWDEVTGQRRSELSPMASSTPQDSRVEPYQLPAEF 2378
>SB_31861| Best HMM Match : rve (HMM E-Value=3.6e-07)
Length = 1253
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +1
Query: 250 SPSSSNPSLA-TKGSTSELTHRHSP 321
SP +N +LA TKG TSE RH P
Sbjct: 374 SPQVTNHNLARTKGQTSEGNRRHHP 398
>SB_12097| Best HMM Match : Birna_VP5 (HMM E-Value=4.6)
Length = 383
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 114 QILHPA-AHHPCLIRQGATCPGRGVSLRPAPRPRKGTRRP 230
Q+ H A H L R A P R SLR A P GT+ P
Sbjct: 227 QVAHGLYARHNTLTRTRA--PSRSCSLRTAQHPHTGTKSP 264
>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 186 SLRPAPRPRKGTRRPHDAMSPVTVLVEPVACDEG 287
S+ A P +G+ +A+SPVT PV +EG
Sbjct: 300 SITDAQSPVQGSLNSQNAISPVTTPTAPVEREEG 333
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,209,686
Number of Sequences: 59808
Number of extensions: 262615
Number of successful extensions: 715
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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